View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18930_low_11 (Length: 238)
Name: NF18930_low_11
Description: NF18930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18930_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 48653605 - 48653739
Alignment:
| Q |
87 |
tatatatatgatcaagaatcagaaattccagttccaaaggaatgattgatgagaaaaaggatcgtcattatcatcatcatattcttcaacggatgataag |
186 |
Q |
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| T |
48653605 |
tatatatatgatcaagaatcagaaattccagttccaaaggaatgattgatgagaaaaaggatcgccattatcatcatcatattcttcaactgatgataag |
48653704 |
T |
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| Q |
187 |
ttctgataatcctcaaaaagtggtggtgatggaat |
221 |
Q |
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| T |
48653705 |
ttctgataatcctcaaaaagtggtggtggtggaat |
48653739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 48653468 - 48653569
Alignment:
| Q |
1 |
ccatatagaatatggtagcaaaaaacaaattataccaatc-------agagagaggctgtaaatagttaaaagtaaaatttagcatgcaaaagtatatat |
93 |
Q |
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| T |
48653468 |
ccatatacaatatggtagcaaaaaacaaattataccaatcactaatcagagagaggctgtaaatagttaaaagtaaaatttagcatgcaaaagtatatat |
48653567 |
T |
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| Q |
94 |
at |
95 |
Q |
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|| |
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| T |
48653568 |
at |
48653569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 48645241 - 48645292
Alignment:
| Q |
112 |
ttccagttccaaaggaatgattgatgagaaaaaggatcgtcattatcatcatcat |
166 |
Q |
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| T |
48645241 |
ttccagttccaaaggaatgattgatgggaaaatgg---gtcattatcatcatcat |
48645292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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