View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18930_low_3 (Length: 407)
Name: NF18930_low_3
Description: NF18930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18930_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 27214895 - 27215280
Alignment:
| Q |
1 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
27214895 |
ccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttggagctctgaaggacaca |
27214994 |
T |
|
| Q |
101 |
caacatttatgttcccaggacaactggacgttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214995 |
caacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
27215094 |
T |
|
| Q |
201 |
atcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggca |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27215095 |
atcatagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggca |
27215194 |
T |
|
| Q |
301 |
caatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
27215195 |
caatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaag |
27215280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 27432604 - 27432989
Alignment:
| Q |
1 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
27432604 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcacttggagctctgaagggcaca |
27432703 |
T |
|
| Q |
101 |
caacatttatgttcccaggacaactggacgttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432704 |
caacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
27432803 |
T |
|
| Q |
201 |
atcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggca |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
27432804 |
atcatagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttacaaccgacttgaccagaggca |
27432903 |
T |
|
| Q |
301 |
caatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaag |
386 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
27432904 |
caatcggcggtggcacaactgaactttccattgttgttggagcatccggttcgtccccaaaatcgacccgaccatggtgatggaag |
27432989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 27444006 - 27443621
Alignment:
| Q |
1 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
27444006 |
ccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttggagctctgaaggacaca |
27443907 |
T |
|
| Q |
101 |
caacatttatgttcccaggacaactggacgttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443906 |
caacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
27443807 |
T |
|
| Q |
201 |
atcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggca |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27443806 |
atcttagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggca |
27443707 |
T |
|
| Q |
301 |
caatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
27443706 |
caatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaag |
27443621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 27220857 - 27221242
Alignment:
| Q |
1 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacaca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||| |||||| || |||||||||||||| |||| |
|
|
| T |
27220857 |
ccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaggcaatcacactcccatcagtaccaataacttggagctctgaagggcaca |
27220956 |
T |
|
| Q |
101 |
caacatttatgttcccaggacaactggacgttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27220957 |
caacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccgtccacattgctcac |
27221056 |
T |
|
| Q |
201 |
atcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggca |
300 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
27221057 |
atcgtagaagtcttgtcccccgtctgttgctaccgttatttctaccaatgttgctggtgggattgccccagcaccgttgcaaccgacttgaccagaggca |
27221156 |
T |
|
| Q |
301 |
caatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221157 |
caatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatctacccgaccatggtgatggaag |
27221242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 27207524 - 27207909
Alignment:
| Q |
1 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacaca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207524 |
ccacgacaacaatatttatcttcctttaaagccaaacaagcgctcttacaagcaaacacactcccatcagaaccaatcacctggagctctgaaggacaca |
27207623 |
T |
|
| Q |
101 |
caacatttatgttcccaggacaactggacgttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
200 |
Q |
| |
|
||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||| |||| ||||| ||||| ||||| ||||| ||||||||||| |
|
|
| T |
27207624 |
caacattaatgttcctaggacaactagcggttttgcagtcaccactcccaccttgtggcattacggacatgggcacattgaacccatcaacattgctcac |
27207723 |
T |
|
| Q |
201 |
atcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggca |
300 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
27207724 |
atcgtagaaatcttgtcccccgttggatgctattgttatttctaccagtgttgctggtgggattgcgccagcaccgttgcaaccgacttgaccggaggca |
27207823 |
T |
|
| Q |
301 |
caatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaag |
386 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27207824 |
caatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcggccccaaaatcttcccgaccatggtgatggaag |
27207909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 27388818 - 27389194
Alignment:
| Q |
1 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacaca |
100 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||| |||||||||||||| ||||| ||||||||||| | | || ||||| | ||||||| |
|
|
| T |
27388818 |
ccacgacaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaaccttttaattgaagctccgcgggacaca |
27388917 |
T |
|
| Q |
101 |
caacatttatgttcccaggacaactggacgttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
200 |
Q |
| |
|
|| || ||||| | ||||| || || | |||||| || ||||| || |||||||| ||||| ||||||||||||||||| || || || |||||||| |
|
|
| T |
27388918 |
cagagttgatgtttgctggacagctagaggatttgcaatcgccacttccgccttgtggagttacggacattggcacgttgaaaccgtcaacgttgctcac |
27389017 |
T |
|
| Q |
201 |
atcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggca |
300 |
Q |
| |
|
|||||||||||||||||| || |||| ||| || || ||||| ||||| |||||||||||||||||||||||||| ||||| | | ||||||||| ||| |
|
|
| T |
27389018 |
atcgtagaaatcttgtcctccatttgatgccactgtaatttcaaccaaagttgctggtgggattgcgccagcaccattgcatgcaacttgaccagatgca |
27389117 |
T |
|
| Q |
301 |
caatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatgg |
377 |
Q |
| |
|
|||||||| |||||||| | |||| ||| |||||| | ||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
27389118 |
caatcggcagtggcacaagtaaactgtccgttgttggttgagcatccggttcgggcccaaaatcgacctgaccatgg |
27389194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 27409774 - 27410149
Alignment:
| Q |
1 |
ccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacaca |
100 |
Q |
| |
|
|||||||||||||||| |||| || |||||||| ||||| |||||||||||||| ||||||||||||||||| | || || || |||| ||||||| |
|
|
| T |
27409774 |
ccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaaccttttacttgaagttctgcgggacaca |
27409873 |
T |
|
| Q |
101 |
caacatttatgttcccaggacaactggacgttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcac |
200 |
Q |
| |
|
|| | || || || | |||||||| | | |||||| ||| ||||||||||||| |||||| | |||||||||||||| || || || |||||||| |
|
|
| T |
27409874 |
cagcgttgatatttgctggacaactagcggctttgcaagggccattcccaccttgtggagttacaaaaattggcacgttgaacccgtcaacgttgctcac |
27409973 |
T |
|
| Q |
201 |
atcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggca |
300 |
Q |
| |
|
|||||||||||||||||| || |||| ||| | ||| ||||| || || |||||||||||||||||||||||||| ||||| || | ||||||||| || |
|
|
| T |
27409974 |
atcgtagaaatcttgtcctccatttgatgccatggtaatttcaactaaagttgctggtgggattgcgccagcaccattgcaccccacttgaccagaccca |
27410073 |
T |
|
| Q |
301 |
caatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatg |
376 |
Q |
| |
|
|||||||| |||||||| || |||||| | |||||| | ||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
27410074 |
caatcggctgtggcacaactaaacttttctttgttgattgagcatccggttcttgcccaaaatcgaccagaccatg |
27410149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 20952530 - 20952617
Alignment:
| Q |
27 |
taaagccaaacaagcgctcttacaagcaaccacactcccatcagaaccaatcacctggagctctgaaggacacacaacatttatgttc |
114 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||| ||| |||||| |
|
|
| T |
20952530 |
taaagccaaacaagcgcttttacaagccaccacactcccatcagaaccggtcacttggagctcttaaggacacacaatattaatgttc |
20952617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 314
Target Start/End: Original strand, 27454712 - 27454834
Alignment:
| Q |
192 |
attgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttga |
291 |
Q |
| |
|
|||||||||||| ||||||||||||| || || || || || |||||||||||||||||||||||||||||||| || ||| | ||| |||| | |||| |
|
|
| T |
27454712 |
attgctcacatcatagaaatcttgtctcctgtctgatgtaaccgttatttctaccaatgttgctggtgggattgcacctgcatcattggaacccatttga |
27454811 |
T |
|
| Q |
292 |
ccagaggcacaatcggcggtggc |
314 |
Q |
| |
|
|| ||| ||||||||| ||||| |
|
|
| T |
27454812 |
ccggagatacaatcggcagtggc |
27454834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 363
Target Start/End: Complemental strand, 27416142 - 27415924
Alignment:
| Q |
146 |
tcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctac |
245 |
Q |
| |
|
|||||||| |||| |||||||| | |||||| ||||| |||| ||||||||| ||| ||||||||||| || |||| ||| || | || || || |
|
|
| T |
27416142 |
tcccacctcgtggagttacagatactggcacattgaacccataagtgttgctcacactgtataaatcttgtcctccatttgatgccactttaatgtcaac |
27416043 |
T |
|
| Q |
246 |
caatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcat |
345 |
Q |
| |
|
|||||||||||||| ||| || ||||||| ||||| | | ||||||||| ||||||| | |||||||| || || ||||| || ||||| |||||| |
|
|
| T |
27416042 |
caatgttgctggtgtaattacgtcagcaccattgcactcaacttgaccagacccacaatcacctgtggcacaactaaaatttccgttattgtttgagcat |
27415943 |
T |
|
| Q |
346 |
ccgg-ttcggccccaaaat |
363 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
27415942 |
ccggtttcgggcccaaaat |
27415924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 20952648 - 20952716
Alignment:
| Q |
154 |
tgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccg |
222 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
20952648 |
tgtggcgttattgacattgacacattgaacctgtccacattgctcacatcatataaatcttgtcccccg |
20952716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 27455087 - 27455139
Alignment:
| Q |
334 |
ttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaag |
386 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||| || |||||||||||||| |
|
|
| T |
27455087 |
ttgttggagcatccgattcggcctcaaaatcaacctgatcatggtgatggaag |
27455139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 362
Target Start/End: Complemental strand, 41457895 - 41457699
Alignment:
| Q |
166 |
gacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattg |
265 |
Q |
| |
|
||||| || |||||||| || || |||||||| | ||||||| | |||||||| ||||| | | ||||| || |||| | |||||||||||||| | || |
|
|
| T |
41457895 |
gacatgggtacgttgaacccgtcaacattgcttatatcgtagtagtcttgtccaccgttggcttctacgtgtagttctgctaatgttgctggtggaactg |
41457796 |
T |
|
| Q |
266 |
cgccagcaccgttgcaaccgagttgaccagaggcacaatcggcggtggcacagctgaactttccattgttgttggagcatccggttcggccccaaaa |
362 |
Q |
| |
|
| || ||||| |||||| ||| ||| || ||| ||||||| || ||||| || || || ||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
41457795 |
caccggcaccattgcaagcgacttggccggagccacaatcagcagtggcgcaactaaattttcctgcattgctcgagcatccggttcggccccaaaa |
41457699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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