View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18930_low_5 (Length: 365)
Name: NF18930_low_5
Description: NF18930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18930_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 48653424 - 48653077
Alignment:
| Q |
1 |
gtcatacatatatacgtacaccataaatatttgtaagtgacctggtttatttcttgctacaacgatttctttccattgattagcactagctaccaactag |
100 |
Q |
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| T |
48653424 |
gtcatacatatatac--acaccataaatatttgtaagtgacctggtttatttcttgctacaacgatctctttccattgattagcactagctaccaactag |
48653327 |
T |
|
| Q |
101 |
aatatgcttttccattttgtaataaatgtttgtattattattgttgatcgatgatcattttgaaccatatgtttag-tttactatagctagctacttcaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48653326 |
aatatgcttttccattttgtaataaatgtttgtattattattgttgatcgatgatcattttgaaccatatgtttagttttactatagctagctacttcaa |
48653227 |
T |
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| Q |
200 |
gtatatctcaaaatcactaaaaacaaactacagtataagtataacactgtcaactttaagtagaagtttaccgtcttccccacgttcttaattataacaa |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48653226 |
gtatatctcaaaatcactaaaaacaaacta------tagtatgacactgtcaactttaagtagaagtttaccgtcttccccacgttcttaattataacaa |
48653133 |
T |
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| Q |
300 |
aaaagaaatagataaattgagttttggagcattcacattcgtttttcatgtatatt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48653132 |
aaaagaaatagataaattgagttttggagcattcacattcgtttttcatgtatatt |
48653077 |
T |
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