View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18931_low_2 (Length: 316)

Name: NF18931_low_2
Description: NF18931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18931_low_2
NF18931_low_2
[»] chr8 (10 HSPs)
chr8 (199-251)||(15152045-15152097)
chr8 (132-168)||(39301964-39302000)
chr8 (132-171)||(5160467-5160506)
chr8 (132-171)||(13759464-13759502)
chr8 (132-171)||(22686918-22686956)
chr8 (132-171)||(37611449-37611488)
chr8 (132-171)||(39302061-39302099)
chr8 (142-244)||(38132012-38132116)
chr8 (139-168)||(7204695-7204724)
chr8 (132-169)||(43382832-43382869)
[»] chr4 (8 HSPs)
chr4 (132-244)||(52439341-52439455)
chr4 (186-251)||(23981117-23981181)
chr4 (132-177)||(54097170-54097214)
chr4 (132-168)||(31592592-31592628)
chr4 (132-171)||(5420189-5420228)
chr4 (132-171)||(12144720-12144759)
chr4 (186-223)||(7085864-7085901)
chr4 (142-170)||(27450046-27450074)
[»] chr3 (10 HSPs)
chr3 (132-172)||(30595644-30595684)
chr3 (132-170)||(41747381-41747419)
chr3 (132-243)||(23591278-23591393)
chr3 (132-171)||(24286231-24286270)
chr3 (132-171)||(54087670-54087709)
chr3 (186-223)||(1421452-1421489)
chr3 (198-251)||(9650115-9650168)
chr3 (132-169)||(19301259-19301296)
chr3 (132-169)||(20123703-20123739)
chr3 (199-244)||(45333850-45333895)
[»] chr7 (6 HSPs)
chr7 (132-171)||(19336122-19336161)
chr7 (132-238)||(12670808-12670919)
chr7 (132-171)||(10659810-10659849)
chr7 (132-169)||(43596397-43596433)
chr7 (135-171)||(28000037-28000073)
chr7 (139-171)||(42695202-42695234)
[»] chr6 (4 HSPs)
chr6 (132-171)||(29239553-29239592)
chr6 (132-171)||(19412557-19412596)
chr6 (130-171)||(14487657-14487697)
chr6 (142-171)||(31733235-31733264)
[»] chr5 (5 HSPs)
chr5 (132-171)||(4633836-4633875)
chr5 (130-171)||(5661815-5661856)
chr5 (132-171)||(28519537-28519576)
chr5 (132-166)||(29209578-29209612)
chr5 (132-168)||(24197472-24197507)
[»] chr1 (5 HSPs)
chr1 (132-171)||(24465954-24465993)
chr1 (132-244)||(46583828-46583943)
chr1 (127-171)||(15879903-15879947)
chr1 (132-169)||(4352300-4352337)
chr1 (199-244)||(43413071-43413116)
[»] scaffold0001 (1 HSPs)
scaffold0001 (132-171)||(53462-53501)
[»] chr2 (5 HSPs)
chr2 (132-171)||(11115430-11115469)
chr2 (132-171)||(31108426-31108465)
chr2 (132-171)||(43015047-43015086)
chr2 (130-171)||(8467378-8467419)
chr2 (199-247)||(493969-494017)
[»] scaffold0375 (1 HSPs)
scaffold0375 (132-170)||(14043-14081)
[»] scaffold0025 (1 HSPs)
scaffold0025 (142-171)||(2938-2967)
[»] scaffold0002 (1 HSPs)
scaffold0002 (142-171)||(342587-342616)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 15152097 - 15152045
Alignment:
Q  199 aaaacaaaatatgacatatattacatgagggtaaaacacccttaactcttaaa 251  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||||||||||||    
T  15152097 aaaacaaaaaatgacatatattacaagggggtaaaacaccattaactcttaaa 15152045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 39302000 - 39301964
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttaca 168  Q
    ||||||||| |||||||||||||||||||||||||||    
T  39302000 ctattaggggggtattccaaaaaatatatattttaca 39301964  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 5160467 - 5160506
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  5160467 ctattaggggggtattccaaaaaaaatatattttacaggg 5160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 13759464 - 13759502
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  13759464 ctattaggg-ggtattccaaaaaatatatattttacaggg 13759502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 22686918 - 22686956
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22686918 ctattaggg-ggtattccaaaaaatatatattttacaggg 22686956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 37611449 - 37611488
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  37611449 ctattaggggggtattccaaaaaaaatatattttacaggg 37611488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 39302061 - 39302099
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  39302061 ctattaggg-ggtattccaaaaaatatatattttacaggg 39302099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 38132012 - 38132116
Alignment:
Q  142 ggtattccaaaaaatatatattttaca--gggtaaatcnnnnnnnntattttacag-gtaaaaacaaaatatgacatatattacatgagggtaaaacacc 238  Q
    |||||||||||||||||||||||||||  ||||| |||        |||||||||| | |||||||||| ||||| ||||||||| | ||||||||||||    
T  38132012 ggtattccaaaaaatatatattttacagggggtatatcaaaaaaaatattttacagaggaaaaacaaaaaatgacctatattaca-gggggtaaaacacc 38132110  T
Q  239 cttaac 244  Q
     |||||    
T  38132111 attaac 38132116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 7204724 - 7204695
Alignment:
Q  139 ggaggtattccaaaaaatatatattttaca 168  Q
    ||||||||||||||||||||||||||||||    
T  7204724 ggaggtattccaaaaaatatatattttaca 7204695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 43382869 - 43382832
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacag 169  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  43382869 ctattaggggggtattccaaaaattatatattttacag 43382832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 52439455 - 52439341
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacag--ggtaaatcnnnnnnnntattttaca-ggtaaaaacaaaatatgacatatattacatgagg 228  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||        ||||||||| || | |||||||| ||||| ||||||||| | ||    
T  52439455 ctattaggggggtattccaaaaaatatatattttacaggaggtaaatcaataaaaatattttacaggggagaaacaaaaaatgacctatattaca-gggg 52439357  T
Q  229 gtaaaacacccttaac 244  Q
    |||||||||| |||||    
T  52439356 gtaaaacaccattaac 52439341  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 23981181 - 23981117
Alignment:
Q  186 tattttacaggtaaaaacaaaatatgacatatattacatgagggtaaaacacccttaactcttaaa 251  Q
    |||||||||||  ||||||||| ||||| |||||||||||| ||||||||||| ||||| ||||||    
T  23981181 tattttacaggggaaaacaaaaaatgacctatattacatga-ggtaaaacaccattaacccttaaa 23981117  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 54097214 - 54097170
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacagggtaaatc 177  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  54097214 ctattaggggggtattccaaaaaa-atatattttacagggtaaatc 54097170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 31592628 - 31592592
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttaca 168  Q
    |||||||||||||||||||||||| ||||||||||||    
T  31592628 ctattagggaggtattccaaaaaaaatatattttaca 31592592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 5420189 - 5420228
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  5420189 ctattaggggggtattccaaaaaatatatattttataggg 5420228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 12144720 - 12144759
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  12144720 ctattaggggggtattccaaaaaaaatatattttacaggg 12144759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 7085901 - 7085864
Alignment:
Q  186 tattttacaggtaaaaacaaaatatgacatatattaca 223  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  7085901 tattttacagggaaaaacaaaaaatgacatatattaca 7085864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 27450046 - 27450074
Alignment:
Q  142 ggtattccaaaaaatatatattttacagg 170  Q
    |||||||||||||||||||||||||||||    
T  27450046 ggtattccaaaaaatatatattttacagg 27450074  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 30595644 - 30595684
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacagggt 172  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  30595644 ctattaggggggtattccaaaaaatatatattttacagggt 30595684  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 41747381 - 41747419
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacagg 170  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  41747381 ctattaggggggtattccaaaaaatatatattttacagg 41747419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 23591393 - 23591278
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg---taaatcnnnnnnnntattttacag--gtaaaaacaaaatatgacatatattacatga 226  Q
    ||||||||| |||||| ||||||| |||||||||||||||   ||||||        ||||||||||  | |||||||||| ||||| |||||||||||     
T  23591393 ctattaggg-ggtatttcaaaaaaaatatattttacagggggataaatcaaaaaaaatattttacagagggaaaaacaaaaaatgacctatattacatgg 23591295  T
Q  227 gggtaaaacacccttaa 243  Q
    |||||||||||| ||||    
T  23591294 gggtaaaacaccattaa 23591278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 24286270 - 24286231
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  24286270 ctattaggggagtattccaaaaaatatatattttacaggg 24286231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 54087670 - 54087709
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  54087670 ctattaggggggtattccaaaaaatatatattttataggg 54087709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 1421489 - 1421452
Alignment:
Q  186 tattttacaggtaaaaacaaaatatgacatatattaca 223  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  1421489 tattttacagggaaaaacaaaaaatgacatatattaca 1421452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 9650115 - 9650168
Alignment:
Q  198 aaaaacaaaatatgacatatattacatgagggtaaaacacccttaactcttaaa 251  Q
    |||||| ||| ||||||||||||||||| ||||||| |||| ||||| ||||||    
T  9650115 aaaaaccaaaaatgacatatattacatgggggtaaagcaccattaacccttaaa 9650168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 19301296 - 19301259
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacag 169  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  19301296 ctattagggggctattccaaaaaatatatattttacag 19301259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 20123739 - 20123703
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacag 169  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  20123739 ctattaggg-ggtattccaaaaaatatatattttacag 20123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 45333895 - 45333850
Alignment:
Q  199 aaaacaaaatatgacatatattacatgagggtaaaacacccttaac 244  Q
    ||||||||| ||||| ||||||||| |||||||||||||| |||||    
T  45333895 aaaacaaaaaatgacctatattacaggagggtaaaacaccattaac 45333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 19336161 - 19336122
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  19336161 ctattaggggggtattccaaaaaatatatattttacaggg 19336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 12670808 - 12670919
Alignment:
Q  132 ctattagggaggtattccaaaa-aatatatattttaca--gggtaaatcnnnnnnnntattttacaggta--aaaacaaaatatgacatatattacatga 226  Q
    ||||||||| |||||||||||| |||||||||||||||  |||||||||        ||||||||||| |  ||||||||| ||||| ||||||||| |     
T  12670808 ctattaggggggtattccaaaaaaatatatattttacagggggtaaatcaaaaaaaatattttacagggaggaaaacaaaaaatgacctatattacaggg 12670907  T
Q  227 gggtaaaacacc 238  Q
    ||||||||||||    
T  12670908 gggtaaaacacc 12670919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 10659849 - 10659810
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  10659849 ctattaggggggtattctaaaaaatatatattttacaggg 10659810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 43596433 - 43596397
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacag 169  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  43596433 ctattaggg-ggtattccaaaaaatatatattttacag 43596397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 28000073 - 28000037
Alignment:
Q  135 ttagggaggtattccaaaaaatatatattttacaggg 171  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28000073 ttaggggggtattccaaaaaaaatatattttacaggg 28000037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 42695202 - 42695234
Alignment:
Q  139 ggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| |||||||||||||||||||||||    
T  42695202 ggaggtatttcaaaaaatatatattttacaggg 42695234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 29239592 - 29239553
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29239592 ctattaggggggtattccaaaaaatatatattttacaggg 29239553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 19412557 - 19412596
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  19412557 ctattaggggggtattctaaaaaatatatattttacaggg 19412596  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 14487697 - 14487657
Alignment:
Q  130 atctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  14487697 atctattaggg-ggtatttcaaaaaatatatattttacaggg 14487657  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 31733235 - 31733264
Alignment:
Q  142 ggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||||||||||||||||||||||||    
T  31733235 ggtattccaaaaaatatatattttacaggg 31733264  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 4633875 - 4633836
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  4633875 ctattaggggggtattccaaaaaatatatattttacaggg 4633836  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 5661815 - 5661856
Alignment:
Q  130 atctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  5661815 atctattaggggggtattccaaaaaaaatatattttacaggg 5661856  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 28519576 - 28519537
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  28519576 ctattaggggggtattccaaaaaaaatatattttacaggg 28519537  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 29209612 - 29209578
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatatttta 166  Q
    ||||||||| |||||||||||||||||||||||||    
T  29209612 ctattaggggggtattccaaaaaatatatatttta 29209578  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 24197472 - 24197507
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttaca 168  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24197472 ctattaggg-ggtattccaaaaaatatatattttaca 24197507  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 24465993 - 24465954
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  24465993 ctattaggggggtattccaaaaaatatatattttacaggg 24465954  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 46583943 - 46583828
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttaca--gggtaaatcnnnnnnnntattttaca--ggtaaaaacaaaatatgacatatattacatgag 227  Q
    ||||||||| |||||||||||| ||||||||||||||  |||||||||        |||||||||  || |||||||||| ||||| ||||||||| |||    
T  46583943 ctattaggggggtattccaaaagatatatattttacagggggtaaatcaaaaaaaatattttacaggggaaaaaacaaaaaatgacctatattaca-gag 46583845  T
Q  228 ggtaaaacacccttaac 244  Q
    |||||| |||| |||||    
T  46583844 ggtaaagcaccattaac 46583828  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 15879903 - 15879947
Alignment:
Q  127 ataatctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    |||| |||||| || ||||||||||||||||||||||||||||||    
T  15879903 ataacctattaagggggtattccaaaaaatatatattttacaggg 15879947  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 4352300 - 4352337
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacag 169  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  4352300 ctattaggggggtattccaaaaaaaatatattttacag 4352337  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 43413071 - 43413116
Alignment:
Q  199 aaaacaaaatatgacatatattacatgagggtaaaacacccttaac 244  Q
    ||||||||| ||||| ||||||||| |||||||||||||| |||||    
T  43413071 aaaacaaaaaatgacctatattacaggagggtaaaacaccattaac 43413116  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 53462 - 53501
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  53462 ctattaggggggtattccaaaaaatatatatattacaggg 53501  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 11115430 - 11115469
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  11115430 ctattaagggggtattccaaaaaatatatattttacaggg 11115469  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 31108465 - 31108426
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  31108465 ctattaggggggtattccaaaaaaaatatattttacaggg 31108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 43015086 - 43015047
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  43015086 ctattaggggggtattccaaaaaaaatatattttacaggg 43015047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 8467378 - 8467419
Alignment:
Q  130 atctattagggaggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||||| |||||||||||||| | |||||||||||||    
T  8467378 atctattaggggggtattccaaaaaaaaaatattttacaggg 8467419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 493969 - 494017
Alignment:
Q  199 aaaacaaaatatgacatatattacatgagggtaaaacacccttaactct 247  Q
    ||||||||| ||||| ||||||||| | |||||||||||| ||||||||    
T  493969 aaaacaaaaaatgacctatattacaggggggtaaaacaccattaactct 494017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 14081 - 14043
Alignment:
Q  132 ctattagggaggtattccaaaaaatatatattttacagg 170  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  14081 ctattaggggggtattccaaaaaaaatatattttacagg 14043  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 2938 - 2967
Alignment:
Q  142 ggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||||||||||||||||||||||||    
T  2938 ggtattccaaaaaatatatattttacaggg 2967  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 342587 - 342616
Alignment:
Q  142 ggtattccaaaaaatatatattttacaggg 171  Q
    ||||||||||||||||||||||||||||||    
T  342587 ggtattccaaaaaatatatattttacaggg 342616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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