View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18932_high_14 (Length: 221)

Name: NF18932_high_14
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18932_high_14
NF18932_high_14
[»] chr8 (16 HSPs)
chr8 (1-103)||(3430331-3430433)
chr8 (112-206)||(3405819-3405913)
chr8 (122-206)||(3430249-3430335)
chr8 (115-206)||(3365987-3366078)
chr8 (111-206)||(3396867-3396962)
chr8 (110-206)||(3319568-3319664)
chr8 (128-206)||(3389357-3389435)
chr8 (112-206)||(31177689-31177783)
chr8 (112-206)||(13789978-13790072)
chr8 (112-183)||(3283952-3284023)
chr8 (112-206)||(3259791-3259885)
chr8 (112-168)||(3322845-3322901)
chr8 (116-158)||(3377005-3377047)
chr8 (117-206)||(3266488-3266577)
chr8 (112-167)||(13810174-13810229)
chr8 (118-206)||(7163716-7163804)
[»] chr5 (6 HSPs)
chr5 (111-206)||(20813688-20813783)
chr5 (111-206)||(20840127-20840222)
chr5 (115-206)||(15804950-15805041)
chr5 (130-206)||(12597098-12597174)
chr5 (130-206)||(30419705-30419781)
chr5 (116-168)||(12598035-12598087)
[»] chr2 (1 HSPs)
chr2 (111-206)||(14765799-14765894)
[»] chr7 (1 HSPs)
chr7 (112-206)||(8370188-8370282)
[»] scaffold0468 (1 HSPs)
scaffold0468 (127-205)||(3379-3457)
[»] chr3 (2 HSPs)
chr3 (112-206)||(6903973-6904067)
chr3 (112-158)||(32409843-32409889)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3430433 - 3430331
Alignment:
Q  1 attaggacatgcttgcacttccactttaggcgatgtcactgtttttacatttggtgatagtaacacttcctctgcttgtaataactccatttttgcatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3430433 attaggacatgcttgcacttccactttaggcgatgtcactgtttttacatttggtgatagtaacacttcctctgcttgtaataactccatttttgcatca 3430334  T
Q  101 ata 103  Q
    |||    
T  3430333 ata 3430331  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 3405819 - 3405913
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  3405819 gtctccttagcagtcaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacaccttcccaatcttcatc 3405913  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 3430335 - 3430249
Alignment:
Q  122 caataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatact--acactttgccaatcttcatc 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  3430335 caataaatccatgcccaaaagctacaaaattctccacattgtcaccaactcctaaatttgatactacacactttgccaatcttcatc 3430249  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 3366078 - 3365987
Alignment:
Q  115 tccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||  | |||||||||||||||    
T  3366078 tccttaacagtaaatccatgcccaatagctacaaaaatctccaaattgttaccaactcctaaatttgacactatgccttgccaatcttcatc 3365987  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 3396867 - 3396962
Alignment:
Q  111 cgtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| |||||  ||||||||| ||||||| || ||||||||||||    
T  3396867 cgtctccttaacagtcaatccatgcccaatagctacaaaaatctccacattgtcatcaacttttaaatttgacactacaccttcccaatcttcatc 3396962  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 3319664 - 3319568
Alignment:
Q  110 tcgtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||||||||||||| |  ||||||| |||| | ||||||||||||||| |||||||||||||||||| |||||||| || | |||||||||||||||    
T  3319664 tcgtctccttaacagtccatccatgtccaataactacaaaaatctccaaattgtcaccaactcctaattttgatacgacgccttgccaatcttcatc 3319568  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 3389357 - 3389435
Alignment:
Q  128 atccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| ||   |||||||||||||||    
T  3389357 atccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatc 3389435  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 31177783 - 31177689
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||  | |||| || ||||||||||||    
T  31177783 gtctccttaacagttaatccatgcccaatagctacaaaaacctccacattgtcaccaacaccaaaatttgaggcaacaccttcccaatcttcatc 31177689  T

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Target: chr8; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 13790072 - 13789978
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||| ||||||||| || || | ||||||| ||||||  |||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  13790072 gtcttcttaacaatcaacccgtccccaaaaactacaattatctccaccttgtcaccaacacctaaatttgacactacaccttgccaatcttcatc 13789978  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 3283952 - 3284023
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgat 183  Q
    |||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  3283952 gtctccttaacaatcaactcatgcccaaaagctacaaatatctccacattgtcaccaggtcctagatttgat 3284023  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 3259791 - 3259885
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||| ||||||||| |||||||| |||||||||||||||||||| |||| |||||||   |||| |||||||| |||| | | ||||||||||||    
T  3259791 gtctgcttaacaatcaatccatggccaaaagctacaaaaatctctacatcgtcaccaggacctagatttgatattacattcttccaatcttcatc 3259885  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 3322845 - 3322901
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcacca 168  Q
    |||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||    
T  3322845 gtctccttaacaatcaatccgtgcccaaaaacaacaaaaatctccacattgtcacca 3322901  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 3377047 - 3377005
Alignment:
Q  116 ccttaacaataaatccatgcccaaaagctacaaaaatctccac 158  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  3377047 ccttaacaatcaatccacgcccaaaagctacaaaaatctccac 3377005  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 3266488 - 3266577
Alignment:
Q  117 cttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||||||| ||||||||| ||||||||||| |||||| |||||  ||||||  ||||| |||||||  |||| | | ||||||||||||    
T  3266488 cttaacaatcaatccatgctcaaaagctacataaatcttcacatcatcaccaggtcctagatttgatgttacattcttccaatcttcatc 3266577  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 13810229 - 13810174
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcacc 167  Q
    |||||||||||||| ||||||  |||||||  ||||||||||||||| ||||||||    
T  13810229 gtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcacc 13810174  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 7163716 - 7163804
Alignment:
Q  118 ttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||||||| |||| || |||||||| |||||||||||| ||||  ||||||  ||||| |||||||  |||| | | ||||||||||||    
T  7163716 ttaacaatcaatctattcccaaaagatacaaaaatctctacatcatcaccaggtcctagatttgatgttacattcttccaatcttcatc 7163804  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 20813783 - 20813688
Alignment:
Q  111 cgtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||| ||||||| || ||||||||||||    
T  20813783 cgtctccttaacagtaaatccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacactacaccttcccaatcttcatc 20813688  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 20840222 - 20840127
Alignment:
Q  111 cgtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||| | ||||| || ||||||||||||    
T  20840222 cgtctccttaacagtaaatccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacaatacaccttcccaatcttcatc 20840127  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 15805041 - 15804950
Alignment:
Q  115 tccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||||||| ||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||| ||||  | |||||||||||||||    
T  15805041 tccttaacagtaaatccatgcccaacagctacaaatatttccacattgttaccaactcctaaatttgacactatgccttgccaatcttcatc 15804950  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 12597174 - 12597098
Alignment:
Q  130 ccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    ||||| |||| |||||| |||||||||||||||||||||||||| |||||||||| || || |||||||||||||||    
T  12597174 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttgatattaaaccttgccaatcttcatc 12597098  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 30419781 - 30419705
Alignment:
Q  130 ccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||  |||||  ||||||||||||||    
T  30419781 ccattccctaaagctacaaaaatctccatattgtcaccagctcctaaatttgattttacaccctgccaatcttcatc 30419705  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 12598035 - 12598087
Alignment:
Q  116 ccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcacca 168  Q
    |||||||||| |||||| |||||||||||||||||||||||||  ||||||||    
T  12598035 ccttaacaatcaatccacgcccaaaagctacaaaaatctccacgctgtcacca 12598087  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 14765799 - 14765894
Alignment:
Q  111 cgtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||||||||||  || ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  14765799 cgtctccttaattatcaatccgtgcccaaaagcaacaaaaatctcaacattgtcaccaactcctaaatttgatgctacaccttgccaatcttcatc 14765894  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 8370188 - 8370282
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||||||||||  | |||||||| | |||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8370188 gtctccttaactgtcaatccatgtctaaaagtaacaaaaatctccacattgtcaccaactcctaaatttgatactacaccttgccaatcttcatc 8370282  T

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Target: scaffold0468 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 3379 - 3457
Alignment:
Q  127 aatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcat 205  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||| |||||||||||||    
T  3379 aatccatgcccaaaagctacaaaaatccccacattgtccccaactgctaaatttgatattacactctgccaatcttcat 3457  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 6903973 - 6904067
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacactttgccaatcttcatc 206  Q
    |||| ||||||| | ||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||| |||||| ||||||||||||||    
T  6903973 gtcttcttaacagtcaatccatgcccaaaagctacaaaaatccccacactgtccccaactgctaaatttgatattacactctgccaatcttcatc 6904067  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 32409843 - 32409889
Alignment:
Q  112 gtctccttaacaataaatccatgcccaaaagctacaaaaatctccac 158  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  32409843 gtctccttaacaatcaatccatgctcaaaagctacaaagatctccac 32409889  T

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