View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18932_low_1 (Length: 741)

Name: NF18932_low_1
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18932_low_1
NF18932_low_1
[»] chr7 (2 HSPs)
chr7 (340-724)||(324271-324655)
chr7 (1-285)||(324705-324989)
[»] chr8 (2 HSPs)
chr8 (423-496)||(11940905-11940978)
chr8 (425-496)||(11910691-11910762)
[»] chr5 (1 HSPs)
chr5 (425-496)||(6142562-6142633)
[»] chr4 (1 HSPs)
chr4 (539-578)||(46304354-46304393)
[»] scaffold0384 (2 HSPs)
scaffold0384 (549-594)||(6382-6428)
scaffold0384 (16-61)||(5044-5089)
[»] chr3 (2 HSPs)
chr3 (412-481)||(25580418-25580487)
chr3 (426-491)||(51298448-51298513)
[»] chr1 (1 HSPs)
chr1 (537-578)||(20949613-20949654)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 340 - 724
Target Start/End: Complemental strand, 324655 - 324271
Alignment:
Q  340 ttgagttaccgatgaagaacgggaggccaaatgtcggcatgtaatgttcctgaaaaaatgacgataattgagttatttagctggtgtattttttaaatta 439  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324655 ttgagttaccgatgaagaacgggaggccaaatgtaggcatgtaatgttcctgaaaaaatgacgataattgagttatttagctggtgtattttttaaatta 324556  T
Q  440 aaatcaaaatatcgaataaaaacataacatcccacatccaagatctccactcgacatattttggggtttaatttcatgaaaacaaactcaattccataaa 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324555 aaatcaaaatatcgaataaaaacataacatcccacatccaagatctccactcgacatattttggggtttaatttcatgaaaacaaactcaattccataaa 324456  T
Q  540 aaaggcccaattcaaaggttttaaaccctaatccccaaaccggcttaaactaaaatcctagaatatttccaacctcacacaacagattcgaatatttagt 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324455 aaaggcccaattcaaaggttttaaaccctaatccccaaaccggcttaaactaaaatcctagaatatttccaacctcacacaacagattcgaatatttagt 324356  T
Q  640 gtggttgattgtttaatttcatcaaaacacattcaatcaacaagtttcgaataattccttcaagcaacacagaagagattcaatt 724  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  324355 gtggttgattgtttaatttcatcaaaacacattcaatcaacaagtttcaaataattccttcaagcaacacagaagagattcaatt 324271  T

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Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 324989 - 324705
Alignment:
Q  1 tttgtcttcaggatcttgttttgatcaattaagaaacccaagggtgagaatattttaatatacggctaagaagttaaaagagaaaaggacagcataacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324989 tttgtcttcaggatcttgttttgatcaattaagaaacccaagggtgagaatattttaatatacggctaagaagttaaaagagaaaaggacagcataacag 324890  T
Q  101 ctaaatggatacattaaacagcctaaaacaaatggacacaatttttcaagtgtggcaacaatagtaagaaaaacataaccaattagtgcaaagtcaaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324889 ctaaatggatacattaaacagcctaaaacaaatggacacaatttttcaagtgtggcaacaatagtaagaaaaacataaccaattagtgcaaagtcaaaat 324790  T
Q  201 ctaaatcataagagatggtggtggataatggattgagaaaactcagtttcgttttaagtttcataatcttaaacaaggacagcat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324789 ctaaatcataagagatggtggtggataatggattgagaaaactcagtttcgttttaagtttcataatcttaaacaaggacagcat 324705  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 11940978 - 11940905
Alignment:
Q  423 gtgtattttttaaattaaaatcaaaatatcgaataaaaacataacatcccacatccaagatctccactcgacat 496  Q
    |||||||| ||||||||||||||||||||| || ||||| |||| |||||||||||||||| | ||||||||||    
T  11940978 gtgtatttcttaaattaaaatcaaaatatcaaacaaaaatataatatcccacatccaagattttcactcgacat 11940905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 425 - 496
Target Start/End: Original strand, 11910691 - 11910762
Alignment:
Q  425 gtattttttaaattaaaatcaaaatatcgaataaaaacataacatcccacatccaagatctccactcgacat 496  Q
    |||||| ||||||||||||||||||||| || ||||| |||| |||||||||||||||| | ||||||||||    
T  11910691 gtatttcttaaattaaaatcaaaatatcaaacaaaaatataatatcccacatccaagattttcactcgacat 11910762  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 425 - 496
Target Start/End: Original strand, 6142562 - 6142633
Alignment:
Q  425 gtattttttaaattaaaatcaaaatatcgaataaaaacataacatcccacatccaagatctccactcgacat 496  Q
    |||||| ||||||||||||||||||||| || ||||| |||| |||||||||||||||| | ||||||||||    
T  6142562 gtatttcttaaattaaaatcaaaatatcaaacaaaaatataatatcccacatccaagattttcactcgacat 6142633  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 578
Target Start/End: Original strand, 46304354 - 46304393
Alignment:
Q  539 aaaaggcccaattcaaaggttttaaaccctaatccccaaa 578  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  46304354 aaaagacccaattcaaaggttttaaacactaatccccaaa 46304393  T

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Target: scaffold0384 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 594
Target Start/End: Original strand, 6382 - 6428
Alignment:
Q  549 attcaaaggttttaaaccctaatcccc-aaaccggcttaaactaaaa 594  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  6382 attcaaaggtattaaaccttaatcccccaaaccggcttaaactaaaa 6428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 5044 - 5089
Alignment:
Q  16 ttgttttgatcaattaagaaacccaagggtgagaatattttaatat 61  Q
    ||||||||||||| | ||||||| ||||||||| ||||||||||||    
T  5044 ttgttttgatcaaatgagaaacctaagggtgaggatattttaatat 5089  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 481
Target Start/End: Complemental strand, 25580487 - 25580418
Alignment:
Q  412 ttatttagctggtgtattttttaaattaaaatcaaaatatcgaataaaaacataacatcccacatccaag 481  Q
    |||||||||  |||||||| ||| |||||||| ||||| || || |||||||||  ||||||||||||||    
T  25580487 ttatttagcctgtgtatttcttagattaaaattaaaatgtcaaacaaaaacatagtatcccacatccaag 25580418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 491
Target Start/End: Original strand, 51298448 - 51298513
Alignment:
Q  426 tattttttaaattaaaatcaaaatatcgaataaaaacataacatcccacatccaagatctccactc 491  Q
    ||||| ||| |||| |||||||||||| || ||| | |||| |||||||||||||| |||||||||    
T  51298448 tatttcttatattataatcaaaatatcaaacaaacatataatatcccacatccaaggtctccactc 51298513  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 578
Target Start/End: Complemental strand, 20949654 - 20949613
Alignment:
Q  537 aaaaaaggcccaattcaaaggttttaaaccctaatccccaaa 578  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||    
T  20949654 aaaaaagccccaattaaaaggttataaaccctaatccccaaa 20949613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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