View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18932_low_15 (Length: 240)

Name: NF18932_low_15
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18932_low_15
NF18932_low_15
[»] chr4 (10 HSPs)
chr4 (7-240)||(18913667-18913899)
chr4 (59-205)||(5206856-5207002)
chr4 (80-210)||(52094550-52094680)
chr4 (62-205)||(7123540-7123683)
chr4 (62-205)||(8394250-8394393)
chr4 (62-205)||(16933384-16933527)
chr4 (62-205)||(22133853-22133996)
chr4 (62-151)||(11007858-11007947)
chr4 (59-240)||(12402297-12402478)
chr4 (80-205)||(22781973-22782098)
[»] chr5 (13 HSPs)
chr5 (55-205)||(32584681-32584831)
chr5 (62-205)||(31543633-31543776)
chr5 (62-205)||(34478655-34478798)
chr5 (62-205)||(40380948-40381091)
chr5 (62-205)||(16408167-16408310)
chr5 (62-205)||(29721207-29721350)
chr5 (80-205)||(10750616-10750741)
chr5 (80-205)||(15356085-15356210)
chr5 (80-205)||(23665964-23666089)
chr5 (62-148)||(534591-534677)
chr5 (62-143)||(9788476-9788557)
chr5 (64-209)||(13694330-13694475)
chr5 (62-151)||(26171599-26171688)
[»] chr6 (10 HSPs)
chr6 (42-176)||(10456902-10457036)
chr6 (62-170)||(16651769-16651877)
chr6 (62-170)||(16567818-16567926)
chr6 (62-205)||(16553508-16553651)
chr6 (62-205)||(16630064-16630207)
chr6 (93-240)||(22350181-22350328)
chr6 (80-205)||(33309807-33309932)
chr6 (91-209)||(13879561-13879679)
chr6 (91-209)||(25942491-25942609)
chr6 (80-205)||(26067631-26067756)
[»] chr3 (12 HSPs)
chr3 (62-205)||(7763103-7763246)
chr3 (62-205)||(5259515-5259658)
chr3 (62-170)||(9635351-9635459)
chr3 (62-205)||(10957559-10957702)
chr3 (80-205)||(6065029-6065154)
chr3 (64-157)||(27421519-27421612)
chr3 (62-143)||(29811701-29811782)
chr3 (62-205)||(5192529-5192672)
chr3 (91-209)||(6304133-6304251)
chr3 (91-209)||(10897827-10897945)
chr3 (91-209)||(22625220-22625338)
chr3 (80-205)||(11168998-11169123)
[»] chr2 (8 HSPs)
chr2 (25-147)||(7974387-7974507)
chr2 (59-168)||(42019119-42019228)
chr2 (62-170)||(28569694-28569804)
chr2 (80-205)||(35217206-35217331)
chr2 (80-205)||(36560377-36560502)
chr2 (91-209)||(2737027-2737145)
chr2 (91-209)||(22716474-22716592)
chr2 (91-209)||(39680868-39680986)
[»] chr8 (10 HSPs)
chr8 (54-170)||(10380329-10380445)
chr8 (80-205)||(27827958-27828083)
chr8 (62-205)||(31577530-31577673)
chr8 (62-205)||(43080557-43080700)
chr8 (62-170)||(4732490-4732598)
chr8 (62-205)||(18811663-18811806)
chr8 (91-209)||(16756501-16756619)
chr8 (91-209)||(28328730-28328848)
chr8 (91-209)||(33033462-33033580)
chr8 (24-128)||(18198931-18199035)
[»] chr7 (14 HSPs)
chr7 (82-170)||(6047413-6047501)
chr7 (80-157)||(26213646-26213723)
chr7 (62-205)||(48490237-48490380)
chr7 (80-205)||(7093697-7093822)
chr7 (80-205)||(7350887-7351012)
chr7 (80-205)||(22135730-22135855)
chr7 (80-205)||(40550757-40550882)
chr7 (62-205)||(1048525-1048668)
chr7 (62-205)||(44725484-44725627)
chr7 (67-170)||(47675365-47675468)
chr7 (91-209)||(3324028-3324146)
chr7 (91-209)||(25352174-25352292)
chr7 (91-209)||(25406236-25406354)
chr7 (91-205)||(31157521-31157635)
[»] chr1 (8 HSPs)
chr1 (80-170)||(31658054-31658144)
chr1 (62-205)||(51750937-51751080)
chr1 (80-170)||(50168578-50168668)
chr1 (62-205)||(16227068-16227211)
chr1 (80-170)||(28222649-28222739)
chr1 (91-240)||(14997857-14998006)
chr1 (80-205)||(47178280-47178405)
chr1 (62-151)||(51758434-51758523)
[»] scaffold0016 (1 HSPs)
scaffold0016 (80-205)||(115453-115578)
[»] scaffold1908 (1 HSPs)
scaffold1908 (62-170)||(198-306)
[»] scaffold0140 (1 HSPs)
scaffold0140 (80-205)||(23044-23169)
[»] scaffold1899 (1 HSPs)
scaffold1899 (80-205)||(542-667)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 18913667 - 18913899
Alignment:
Q  7 atcagaaagcaactgaaggagtttaataaaatcattgatgatttggaaaacattaaggatgaagacaatgctttactcttgttttgtgctttacctagat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  18913667 atcagaaagcaactgaaggagtttaataaaatcattgatgatttggaaaacattgaggatgaag-caatgctctactcttgttttgtgctttacctagat 18913765  T
Q  107 cttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaactaaggagttaaccaagtt 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18913766 cttttgagttcttcaaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaactaaggagttaaccaagtc 18913865  T
Q  207 caatcatttaagatttgatgatagtggtgaaggc 240  Q
    |||| |||||||||||||||||||||||||||||    
T  18913866 caatgatttaagatttgatgatagtggtgaaggc 18913899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 5207002 - 5206856
Alignment:
Q  59 ttaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaa 158  Q
    |||||||||||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||  | ||||| || |||| || | |||     
T  5207002 ttaaggatgaagacaaggctatactcttgttgtgtgctctaccaagatcatttgaatccttccaggataccatcctctatggaaaagaagacactatcac 5206903  T
Q  159 cttagaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
    ||| ||||||||| ||||||  || ||||| ||| |||| |||||||    
T  5206902 cttggaggaagtccaagcagctttaagaaccaagaagttgaccaagt 5206856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 52094680 - 52094550
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| ||||| ||||| |||||| | ||||||||| | |||||||| ||||||||||||| ||| || |||||  |||| |     
T  52094680 tactcttgttgtgtgctctaccgagatcatttgaattcttcaaagataccatgctctatggcaaagaaggcattgtcaccttggaagaagttcaagcggc 52094581  T
Q  180 gttgagaactaaggagttaaccaagttcaat 210  Q
     || ||||| |||||||| ||||||| ||||    
T  52094580 tttaagaaccaaggagttgaccaagtccaat 52094550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 7123540 - 7123683
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  7123540 aggacgaagacaaggctatactcttgttgtgtgctctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 7123639  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  7123640 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 7123683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 8394250 - 8394393
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  8394250 aggacgaagacaaggctatactcttgttgtgtgctctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 8394349  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  8394350 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 8394393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 16933527 - 16933384
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | |||| |||| | |||||||||||||||| ||| | |||    
T  16933527 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagatatcatgctctatggcaaggaaggcactgttacctt 16933428  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  16933427 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 16933384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 22133996 - 22133853
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  22133996 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttacctt 22133897  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| ||| |||| |||||||    
T  22133896 ggaagaagttcaagcggctttgagaaccaagcagttgaccaagt 22133853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 11007947 - 11007858
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggca 151  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | ||||||||||||||||    
T  11007947 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggca 11007858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 12402478 - 12402297
Alignment:
Q  59 ttaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaa 158  Q
    ||||||||||||| || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | || ||||| ||||||| | | |     
T  12402478 ttaaggatgaagataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctacggcaaagaaggcactattac 12402379  T
Q  159 cttagaggaagtctaagcagtgttgagaactaaggagttaaccaagttcaatcatttaagatttgatgatagtggtgaaggc 240  Q
    ||| || |||||  |||| |  |||||||| ||| |||| ||||||| |||  |||| | |||| |||| | ||||||||||    
T  12402378 ctttgaagaagttcaagcggatttgagaaccaagaagttgaccaagtccaaggatttcatattttatgaaaatggtgaaggc 12402297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 22782098 - 22781973
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| || ||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  22782098 tactcttgttgtgcgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 22781999  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  22781998 tttgagaaccaaggagttgaccaagt 22781973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 32584681 - 32584831
Alignment:
Q  55 aacattaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattg 154  Q
    |||||| |||||| ||||||  || |||||||||| ||||||||||||||||||||||||| ||||  |||||||||||| |||||||||||||| | |     
T  32584681 aacattgaggatgtagacaagactctactcttgttgtgtgctttacctagatcttttgagtccttcatggataccatgatttatggcaaggaaggaacta 32584780  T
Q  155 tcaacttagaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
    ||| ||| ||||||||| |||| |  |||||||| || |||||||||||||    
T  32584781 tcacctttgaggaagtccaagcggaattgagaaccaaagagttaaccaagt 32584831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 31543633 - 31543776
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  31543633 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttacctt 31543732  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  ||||||  |||||||| |||||||| |||||||    
T  31543733 ggaagaagttcaagcagctttgagaaccaaggagttgaccaagt 31543776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 34478798 - 34478655
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||||||| | |||    
T  34478798 aggatgaggataaagctatactcttgttgtgtgctctaccaaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcattgttacctt 34478699  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  34478698 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 34478655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 40380948 - 40381091
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  40380948 aggacgaagacaaggctatactcttgttgtgtgctctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 40381047  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  40381048 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 40381091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 16408167 - 16408310
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||  |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  16408167 aggacgaagacaaggctatactcttgttgtgtgcgctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 16408266  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  16408267 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 16408310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 29721207 - 29721350
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||  |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  29721207 aggacgaagacaaggctatactcttgttgtgtgcgctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 29721306  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  29721307 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 29721350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 10750616 - 10750741
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  10750616 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 10750715  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  10750716 tttgagaaccaaggagttgaccaagt 10750741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 15356210 - 15356085
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  15356210 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 15356111  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  15356110 tttgagaaccaaggagttgaccaagt 15356085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 23665964 - 23666089
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  23665964 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 23666063  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  23666064 tttgagaaccaaggagttgaccaagt 23666089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 534591 - 534677
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaag 148  Q
    ||||||||||||| ||| |||| ||||| |||||| |||  ||||| ||||| | |||| ||||||||||| | |||||||| ||||    
T  534591 aggatgaagacaaggctatactgttgttgtgtgctctacagagatcatttgaatccttcaaggataccatgctctatggcaaagaag 534677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 9788557 - 9788476
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaa 143  Q
    |||| |||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||  ||||||||||| | ||||||||    
T  9788557 aggacgaagacaaggctatactcttgttgtgtgctctaccgagatcatttgaatcctttaaggataccatgctctatggcaa 9788476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 13694475 - 13694330
Alignment:
Q  64 gatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttag 163  Q
    ||||||||||| | | |||||||||| | | || |||  ||||| ||||| | |||| ||||| ||||| | |||||||| |||| ||||||||  ||      
T  13694475 gatgaagacaaggttatactcttgttgttttctctactgagatcatttgaatccttcaaggatgccatgctctatggcaaagaagacattgtcactttga 13694376  T
Q  164 aggaagtctaagcagtgttgagaactaaggagttaaccaagttcaa 209  Q
    |||||||| |||| |  ||||| || || |||||||||||||||||    
T  13694375 aggaagtccaagcggctttgaggaccaatgagttaaccaagttcaa 13694330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 26171599 - 26171688
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggca 151  Q
    |||| |||||||| ||| |||||||||| |||||  |||| ||||| ||||| | |||  ||||||||||| | |||||||| |||||||    
T  26171599 aggacgaagacaaggctatactcttgttgtgtgcgctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggca 26171688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 10457036 - 10456902
Alignment:
Q  42 tgatgatttggaaaacattaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggc 141  Q
    ||||||||||||||||||| |||||||||||||  || ||| |||||| ||| |||||||||||||||||| || |||| | ||||||||| | |||| |    
T  10457036 tgatgatttggaaaacattgaggatgaagacaaaactctacccttgttgtgtactttacctagatcttttgggtccttcaatgataccatgctttatgac 10456937  T
Q  142 aaggaaggcattgtcaacttagaggaagtctaagc 176  Q
    || ||||||| ||||| ||||||||||||| ||||    
T  10456936 aacgaaggcagtgtcaccttagaggaagtccaagc 10456902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 16651769 - 16651877
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  16651769 aggatgaagacaaggctatactcttgttgtgtgctctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 16651868  T
Q  162 agaggaagt 170  Q
     || |||||    
T  16651869 ggaagaagt 16651877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 16567818 - 16567926
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| ||||||||  || |||||||||| |||||| |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||||||||| |||    
T  16567818 aggacgaagacaagactatactcttgttgtgtgctctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcattgtcacctt 16567917  T
Q  162 agaggaagt 170  Q
     || |||||    
T  16567918 ggaagaagt 16567926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 16553508 - 16553651
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||| |||  ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  16553508 aggacgaagacaaggctatactcttgttgtgtgctctactgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 16553607  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  16553608 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 16553651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 16630064 - 16630207
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||| |||  ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  16630064 aggacgaagacaaggctatactcttgttgtgtgctctactgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 16630163  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  16630164 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 16630207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 22350328 - 22350181
Alignment:
Q  93 tgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaactaag 192  Q
    |||||||||||| || ||||||   ||| ||||||| ||||| |||||||| || |||||| |||  || ||||||||  ||||||  |||||||| ||     
T  22350328 tgctttacctaggtcctttgagaatttcaaggatactatgatttatggcaaagatggcattatcactttggaggaagttcaagcagctttgagaaccaaa 22350229  T
Q  193 gagttaaccaagttcaatcatttaagatttgatgatagtggtgaaggc 240  Q
    ||||| |||||||||||  | || | | ||||||||||||| ||||||    
T  22350228 gagttgaccaagttcaaagagttgaaagttgatgatagtggagaaggc 22350181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 33309807 - 33309932
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  33309807 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 33309906  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  33309907 tttgagaaccaaggagttgaccaagt 33309932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 13879561 - 13879679
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  13879561 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 13879660  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  13879661 aagagttaaccaagttcaa 13879679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 25942491 - 25942609
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  25942491 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 25942590  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  25942591 aagagttaaccaagttcaa 25942609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 26067756 - 26067631
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| | | | ||| || |||||  |||| |     
T  26067756 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactattaccttggaagaagttcaagcggc 26067657  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  26067656 tttgagaaccaaggagttgaccaagt 26067631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 7763103 - 7763246
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| | |||| |||| ||||| ||||| | |||| ||||||||||| | |||||||| ||||||||||||| |||    
T  7763103 aggacgaagacaaggctatactcttgttgtatgctctaccgagatcatttgaatccttcaaggataccatgctctatggcaaagaaggcattgtcacctt 7763202  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| ||||||||||||||||    
T  7763203 ggaagaagttcaagcggctttaagaaccaaggagttaaccaagt 7763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 5259658 - 5259515
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||||||||| |||    
T  5259658 aggacgaagacaaggctatactcttgttgtgtgctctaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcattgtcacctt 5259559  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  5259558 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 5259515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 9635459 - 9635351
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| ||||||||||| ||||| ||||| | |||  ||||||||||| | |||||||| ||||||| ||||| |||    
T  9635459 aggacgaagacaaggctatactcttgttgtgtgctttaccgagatcatttgaatcctttaaggataccatgctctatggcaaagaaggcactgtcacctt 9635360  T
Q  162 agaggaagt 170  Q
     || |||||    
T  9635359 ggaagaagt 9635351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 10957702 - 10957559
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||||||| | |||    
T  10957702 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcattgttacctt 10957603  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  10957602 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 10957559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 6065154 - 6065029
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  6065154 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 6065055  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  6065054 tttgagaaccaaggagttgaccaagt 6065029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 27421519 - 27421612
Alignment:
Q  64 gatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtca 157  Q
    |||||||| || ||| ||||||| || |||||| |||  | ||||||||| | |||| ||||||||||| | |||||||| |||||||||||||    
T  27421519 gatgaagataaagctatactctttttgtgtgctctactgaaatcttttgaatccttcaaggataccatgctctatggcaaagaaggcattgtca 27421612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 29811701 - 29811782
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaa 143  Q
    |||| |||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||| | ||||||||    
T  29811701 aggacgaagacaaggctatactcttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctatggcaa 29811782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 5192529 - 5192672
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||| | |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  5192529 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttaaatcgttcaaagataccatgctctatggcaaggaaggcactgttacctt 5192628  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  5192629 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 5192672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 6304133 - 6304251
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  6304133 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 6304232  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  6304233 aagagttaaccaagttcaa 6304251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 10897827 - 10897945
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||| |||||||| |    
T  10897827 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagttttgagaacca 10897926  T
Q  191 aggagttaaccaagttcaa 209  Q
    | ||||| |||||||||||    
T  10897927 aagagttgaccaagttcaa 10897945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 22625338 - 22625220
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  22625338 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 22625239  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  22625238 aagagttaaccaagttcaa 22625220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 11168998 - 11169123
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | | |||||||||||||| ||| | ||| || |||||  || | ||    
T  11168998 tactcttgttgtgtgctctaccgaaatcttttgaatcattcaaagataccatgctctgtggcaaggaaggcactgttaccttggaagaagttcaaccggt 11169097  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  11169098 tttgagaaccaaggagttgaccaagt 11169123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 7974507 - 7974387
Alignment:
Q  25 gagtttaataaaatcattgatgatttggaaaacattaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgagg 124  Q
    ||||| || |||||| ||||| |||||||||||||| ||||||||||||  | |||||||||||| ||||  |||||||||||  |||||| |||| |||    
T  7974507 gagttgaacaaaatccttgataatttggaaaacattgaggatgaagacagggttttactcttgttgtgtgtgttacctagatc--ttgagtccttcaagg 7974410  T
Q  125 ataccatgatatatggcaaggaa 147  Q
    ||| |||| | ||||||||||||    
T  7974409 atatcatgttttatggcaaggaa 7974387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 42019228 - 42019119
Alignment:
Q  59 ttaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaa 158  Q
    |||||||| ||||||| | | |||||||||| | |||| |||| ||||| ||||| |||||| ||||||||||| | |||  ||| |||||||||||||     
T  42019228 ttaaggataaagacaaagttatactcttgttgtatgctataccgagatcatttgaattcttcaaggataccatgctctatttcaaagaaggcattgtcac 42019129  T
Q  159 cttagaggaa 168  Q
    ||| ||||||    
T  42019128 cttggaggaa 42019119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 28569804 - 28569694
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggca--ttgtcaac 159  Q
    |||||||||| || | | |||||||||| |||||| |||| ||||||||| | | |||| |||||| |||| | |||||||| |||||||  ||||||||    
T  28569804 aggatgaagataaagttatactcttgttgtgtgctctaccgagatcttttaaatccttcaaggatatcatgctctatggcaaagaaggcacattgtcaac 28569705  T
Q  160 ttagaggaagt 170  Q
    ||||| |||||    
T  28569704 ttagaagaagt 28569694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 35217331 - 35217206
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  ||||||     
T  35217331 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcagc 35217232  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| ||||| || |||||||    
T  35217231 tttgagaaccaaggatttgaccaagt 35217206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 36560502 - 36560377
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  36560502 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 36560403  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  36560402 tttgagaaccaaggagttgaccaagt 36560377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 2737027 - 2737145
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    ||||||||||| || || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || |||||||| |||||||  |||||||| |    
T  2737027 tgtgctttacccaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagtttaagcagctttgagaacca 2737126  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  2737127 aagagttaaccaagttcaa 2737145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 22716592 - 22716474
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||| |||||||| |    
T  22716592 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagttttgagaacca 22716493  T
Q  191 aggagttaaccaagttcaa 209  Q
    |  ||||||||||||||||    
T  22716492 aaaagttaaccaagttcaa 22716474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 39680868 - 39680986
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  39680868 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 39680967  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  39680968 aagagttaaccaagttcaa 39680986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 10380445 - 10380329
Alignment:
Q  54 aaacattaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcatt 153  Q
    |||||||||||| |||||||||| | | ||||| || ||||| |||| ||||| ||||||    ||||| ||||||||||| ||||| || |||||||||    
T  10380445 aaacattaaggacgaagacaatgatctgctcttattgtgtgcattacttagatattttgatcaattcgaagataccatgatttatggaaacgaaggcatt 10380346  T
Q  154 gtcaacttagaggaagt 170  Q
    ||||||| |||||||||    
T  10380345 gtcaactaagaggaagt 10380329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 27827958 - 27828083
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| |||||||||||||||||| ||| | ||| || |||||  |||| |     
T  27827958 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctatatggcaaggaaggcactgttaccttggaagaagttcaagcggc 27828057  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  27828058 tttgagaaccaaggagttgaccaagt 27828083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 31577673 - 31577530
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||||||||| ||  || |||||||||| ||||||||||| ||||||||||| |  ||| | ||||| ||| |||||||||| ||||||| | | | |||    
T  31577673 aggatgaagataaaactatactcttgttgtgtgctttaccgagatcttttgaatctttcaaagatactatgctatatggcaaagaaggcactattacctt 31577574  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| || |||||||||||||    
T  31577573 ggaagaagttcaagcggctttgagaaccaatgagttaaccaagt 31577530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 43080557 - 43080700
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  43080557 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttacctt 43080656  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  43080657 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 43080700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 4732490 - 4732598
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| ||||||||  || |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||| | ||| |||| ||||||| ||||| |||    
T  4732490 aggacgaagacaagactatactcttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctatagcaaagaaggcactgtcacctt 4732589  T
Q  162 agaggaagt 170  Q
     || |||||    
T  4732590 ggaagaagt 4732598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 18811663 - 18811806
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||| ||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  18811663 aggatgaggataaagctatacttttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatggtctatggcaaggaaggcactgttacctt 18811762  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  18811763 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 18811806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 16756619 - 16756501
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  16756619 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 16756520  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  16756519 aagagttaaccaagttcaa 16756501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 28328730 - 28328848
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  28328730 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 28328829  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  28328830 aagagttaaccaagttcaa 28328848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 33033462 - 33033580
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| |  ||||||   ||| ||||||| ||| | |||||||| ||||||| | |||  || ||||||||  ||||||| |||||||| |    
T  33033462 tgtgctttacctaggttatttgagaatttcaaggatacaatgctttatggcaaagaaggcactatcactttggaggaagttcaagcagttttgagaacca 33033561  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||| ||||    
T  33033562 aagagttaaccaagatcaa 33033580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 18199035 - 18198931
Alignment:
Q  24 ggagtttaataaaatcattgatgatttggaaaacattaaggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgag 123  Q
    ||||||||| |||||| ||||||||| ||  |||||| | ||| | ||||| ||| ||||||| || || || ||||||||||| ||||||  |||| ||    
T  18199035 ggagtttaaaaaaatccttgatgattcggcgaacattgaagataaggacaaggctctactcttattgtgcgcattacctagatcatttgagcacttcaag 18198936  T
Q  124 gatac 128  Q
    |||||    
T  18198935 gatac 18198931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 6047413 - 6047501
Alignment:
Q  82 ctcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagt 170  Q
    |||||||| |||||| |||| ||||||||||| | |||| ||||||||||  |||||||||| ||||||||||||| ||| || |||||    
T  6047413 ctcttgttgtgtgctctaccgagatcttttgaatccttcaaggataccattctatatggcaaagaaggcattgtcaccttggaagaagt 6047501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 26213646 - 26213723
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtca 157  Q
    |||||||||| |||||| |||| ||||||||||| | |||| || |||||||||| |||||||| ||||||| |||||    
T  26213646 tactcttgttgtgtgctctaccgagatcttttgaatccttcaagaataccatgatctatggcaaagaaggcactgtca 26213723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 48490237 - 48490380
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| ||||| || ||| |||||||||  |||||| |||| ||||| ||||| | |||| ||||||||||| | |||||||| ||||||| ||||| |||    
T  48490237 aggacgaagaaaaggctgtactcttgtcgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctatggcaaagaaggcactgtcacctt 48490336  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  || ||||| |||||||| |||||||    
T  48490337 ggaagaagttcaagcggctttaagaaccaaggagttgaccaagt 48490380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 7093822 - 7093697
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  7093822 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 7093723  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  7093722 tttgagaaccaaggagttgaccaagt 7093697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 7351012 - 7350887
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  7351012 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 7350913  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  7350912 tttgagaaccaaggagttgaccaagt 7350887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 22135730 - 22135855
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  22135730 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 22135829  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  22135830 tttgagaaccaaggagttgaccaagt 22135855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 40550757 - 40550882
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  40550757 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 40550856  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  40550857 tttgagaaccaaggagttgaccaagt 40550882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 1048668 - 1048525
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| || | | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  1048668 aggatgaggataaagctatactcttgttgtgtgctctatcgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttacctt 1048569  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  1048568 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 1048525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 44725484 - 44725627
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| ||||||||||||||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||| ||||||| ||| | |||    
T  44725484 aggatgaggataaagctatactcttgttttgtgctataccgaaatcttttgaatcgttcaaagataccatgctctatggcaaagaaggcactgttatctt 44725583  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| ||| |||| |||||||    
T  44725584 ggaagaagttcaagcggctttgagaaccaagaagttgaccaagt 44725627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 47675468 - 47675365
Alignment:
Q  67 gaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagagg 166  Q
    |||||||| | | |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||| | | |||||| ||||||| ||||| ||| || |    
T  47675468 gaagacaaggttatactcttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctgtggcaaagaaggcactgtcaccttggaag 47675369  T
Q  167 aagt 170  Q
    ||||    
T  47675368 aagt 47675365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 3324146 - 3324028
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  3324146 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 3324047  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  3324046 aagagttaaccaagttcaa 3324028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 25352174 - 25352292
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  25352174 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 25352273  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  25352274 aagagttaaccaagttcaa 25352292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 25406236 - 25406354
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || ||||||||  ||||||  |||||||| |    
T  25406236 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagttcaagcagctttgagaacca 25406335  T
Q  191 aggagttaaccaagttcaa 209  Q
    | |||||||||||||||||    
T  25406336 aagagttaaccaagttcaa 25406354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 31157635 - 31157521
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||| |||| | ||||||||| |  ||| | |||| |||| | |||||||||||||||| ||| | ||| || |||||  ||||||  ||||||||||    
T  31157635 tgtgctctaccgaaatcttttgaatcgttcaaagatatcatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcagctttgagaacta 31157536  T
Q  191 aggagttaaccaagt 205  Q
    ||||||| |||||||    
T  31157535 aggagttgaccaagt 31157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 31658054 - 31658144
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagt 170  Q
    |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||| | |||||||| ||||||||||||| ||| || |||||    
T  31658054 tactcttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctatggcaaagaaggcattgtcaccttggaagaagt 31658144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 51750937 - 51751080
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  51750937 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttacctt 51751036  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  51751037 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 51751080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 50168668 - 50168578
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagt 170  Q
    |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||| | ||||| || ||||||||||||| ||| || |||||    
T  50168668 tactcttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctatggaaaagaaggcattgtcaccttggaagaagt 50168578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 16227068 - 16227211
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    ||||||| || || ||| |||||||||| |||||| |||  | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | |||    
T  16227068 aggatgaggataaagctatactcttgttgtgtgctctactgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttacctt 16227167  T
Q  162 agaggaagtctaagcagtgttgagaactaaggagttaaccaagt 205  Q
     || |||||  |||| |  |||||||| |||||||| |||||||    
T  16227168 ggaagaagttcaagcggctttgagaaccaaggagttgaccaagt 16227211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 28222739 - 28222649
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagt 170  Q
    |||| ||||| |||||| |||| ||||| ||||| | |||| ||||||||||| ||||||| || ||||||| ||||| ||| || |||||    
T  28222739 tacttttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctatatggaaaagaaggcactgtcaccttggaagaagt 28222649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 14997857 - 14998006
Alignment:
Q  91 tgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagtgttgagaacta 190  Q
    |||||||||||||| || ||||||   ||| ||||||| ||| | |||||||| || |||| | |||  || |||||||||||||| |  |||||||| |    
T  14997857 tgtgctttacctaggtcctttgagaatttcaaggatactatgctttatggcaaagagggcactatcactttggaggaagtctaagcggctttgagaacca 14997956  T
Q  191 aggagttaaccaagttcaatcatttaagatttgatgatagtggtgaaggc 240  Q
    | ||| ||||||| |||||  | ||||   ||||||||||||| ||||||    
T  14997957 aagagctaaccaaattcaaggagttaaaggttgatgatagtggagaaggc 14998006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 47178280 - 47178405
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| |  || || |||||  |||| |     
T  47178280 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttacattggaagaagttcaagcggc 47178379  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  47178380 tttgagaaccaaggagttgaccaagt 47178405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 51758434 - 51758523
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggca 151  Q
    ||||||| || || ||| |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | ||||||||||||||||    
T  51758434 aggatgaggataaagctatactcttgttgtgtgctctaccgaaatcttttgaatctttcaaagataccatgctctatggcaaggaaggca 51758523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 115453 - 115578
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||| | |||||||| ||||||| ||||| ||| || |||||  |||| |     
T  115453 tactcttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctatggcaaagaaggcactgtcaccttggaagaagttcaagcggc 115552  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     || ||||| |||||||| |||||||    
T  115553 tttaagaaccaaggagttgaccaagt 115578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1908 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1908
Description:

Target: scaffold1908; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 198 - 306
Alignment:
Q  62 aggatgaagacaatgctttactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaactt 161  Q
    |||| |||||||| ||| |||||||||| |||||| |||| ||||| ||||| | |||| ||||||||||| | |||||||| ||| ||| ||||| |||    
T  198 aggacgaagacaaagctatactcttgttgtgtgctctaccgagatcatttgaatccttcaaggataccatgctctatggcaaagaacgcagtgtcacctt 297  T
Q  162 agaggaagt 170  Q
     || |||||    
T  298 ggaagaagt 306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 23044 - 23169
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| ||| | ||| || |||||  |||| |     
T  23044 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactgttaccttggaagaagttcaagcggc 23143  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  23144 tttgagaaccaaggagttgaccaagt 23169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 542 - 667
Alignment:
Q  80 tactcttgttttgtgctttacctagatcttttgagttcttcgaggataccatgatatatggcaaggaaggcattgtcaacttagaggaagtctaagcagt 179  Q
    |||||||||| |||||| |||| | ||||||||| |  ||| | ||||||||| | |||||||||||||||| | | | ||| || |||||  |||| |     
T  542 tactcttgttgtgtgctctaccgaaatcttttgaatcgttcaaagataccatgctctatggcaaggaaggcactattaccttggaagaagttcaagcggc 641  T
Q  180 gttgagaactaaggagttaaccaagt 205  Q
     |||||||| |||||||| |||||||    
T  642 tttgagaaccaaggagttgaccaagt 667  T

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