View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18932_low_2 (Length: 679)

Name: NF18932_low_2
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18932_low_2
NF18932_low_2
[»] chr7 (1 HSPs)
chr7 (1-644)||(45438618-45439258)


Alignment Details
Target: chr7 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 45438618 - 45439258
Alignment:
Q  1 ggttcttgttccaactatttgatgggaaattaccctattcagatgaattacacatccactgataatattccaaataatcctaactcttctcattggttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45438618 ggttcttgttccaactatttgatgggaaattaccctattcagatgaattacacatccactgataatattccaaataatcctaactcttctcattggttca 45438717  T
Q  101 accaaacaggattaaaaccttttgacatgaactctgaatttacttcaacttctaacatcatgtcaattcttccacaaactaatacctcatttcttcctaa 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45438718 accaaacaggattaaaaccttttgatatgaactctgaatttacttcaacttctaacatcatgtcaattcttccacaaactaatacctcatttcttcctaa 45438817  T
Q  201 tgctttttgctacaaaccatcagaagatgtttctatgtcttcatcttctttccctatgaagaatagtatcttatcttcttggggaattacagataattgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  45438818 tgctttttgctacaaaccatcagaagatgtttctatgtcttcatcttctttccctatgaagaatagtatcttatcttcttggggaattacagat---tgt 45438914  T
Q  301 gacacctctattaaagagaatcaaacagaagaagaggaagaagaagccaagtggaatgagtatcttcacaatccaatgttaatactacaaaatcaagcat 400  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45438915 gacacctctattaaagagaatcaaacagaagaagaagaagaagaagccaagtggaatgagtatcttcacaatccaatgttaatgctacaaaatcaagcat 45439014  T
Q  401 ctgaatctttatgcaatgaaataaagcctgacacaaatttaggccctgatggtttaggggacatattgccacattccaagcaacaagaatcttctcaatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45439015 ctgaatctttatgcaatgaaataaagcctgacacaaatttaggccctgatggtttaggggacatattgccacattccaagcaacaagaatcttctcaatc 45439114  T
Q  501 ttataatatagcagcttttggacaagtgtagcaggcttttgacataaagaatgattttaacgggcttcaaggaatttcagattgtgtgaccaaatatttt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  45439115 ttataatatagcagcttttggacaagtgtagcaggcttttgacataaagaatgattttaaggggcttcaaggaatttcagattgtgcgaccaaatatttt 45439214  T
Q  601 gtttttgtatatagtttttcaccaaacatttatgtcagtctctt 644  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  45439215 gtttctgtatatagtttttcaccaaacatttatgtcagtctctt 45439258  T

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