View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18932_low_3 (Length: 561)
Name: NF18932_low_3
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18932_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 55668028 - 55667487
Alignment:
| Q |
18 |
tcattagagcatgtaattttcagagggaaactatatcctacggccgcggtcatttaaattgtttaatcatatcatattggtcatttaaagtttctttgtt |
117 |
Q |
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| T |
55668028 |
tcattagagcatgaaattttcagagggaaactatatcctacggccgcggtcatttaaattgtttaatcatatcatattggtcatctaaagtttctttgtt |
55667929 |
T |
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| Q |
118 |
tgacctaggtcttttaaatctcattacttccacattgttatcttttttgtcacacattctgttataaaaataaacat--ctgttacgtggctgacattga |
215 |
Q |
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| T |
55667928 |
tgacctaggtcttttaaatctcattacttccacattgttatcttttttgtcacacattctgttataaaaatacacatatctgttacgtggctgacattga |
55667829 |
T |
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| Q |
216 |
tcgcttatcccatgcgtgctcctttttcatcttctatgcgttactcttgtccattttaaaactaggtgaaaccatttgtgtcaacgattgcacaagtgta |
315 |
Q |
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| T |
55667828 |
tcgcttatcccatgcgtgctcctttctcatcttctatgcgcaactcttgtccattttaaaactaggtgaaaccatttgtgtcaactattgcacaagtgta |
55667729 |
T |
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| Q |
316 |
cgtaagaagatgaataaagagaattttctataatattttcgtacattgggagacaaatacatctagaactacacactgcacaatttattcatatattttt |
415 |
Q |
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| T |
55667728 |
----agaagatgaataaagagaattttctataatattttcgtacattgggagacaaacacatctagaactacacactgcacaatttattcatatattttt |
55667633 |
T |
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| Q |
416 |
ccaattttcaaaatacacaacgattgaaagcatgaggttgagtagttttgtttagttcgtaattcatggcaaacagaaacaggtgactaacaaacaaaag |
515 |
Q |
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| T |
55667632 |
ccaattttcaaaatacacaacgattgaaagcatgaggttgaggagttttgtttggttcgtaattcatggcaaacagaaacaggtgactaacaaacaaaag |
55667533 |
T |
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| Q |
516 |
ggcagtatgcaattgggatattattcttgtaattagtttagagatt |
561 |
Q |
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| T |
55667532 |
ggcagtatgcaattgggatattattcttgtaattggtgtagagatt |
55667487 |
T |
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