View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18932_low_4 (Length: 456)
Name: NF18932_low_4
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18932_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 28438086 - 28437650
Alignment:
| Q |
11 |
cacagatgaataagaattcataccaaagaaccattcacttgcaccttcctttcttgaatcaccaccaccaccaacttgaaacatctcagcctttgaaatc |
110 |
Q |
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| T |
28438086 |
cacagatgaataagaattcataccaaagaaccattcacttgcaccttcctttcttgaatcaccaccaccaccaacttgaaacatctcagcctttgaaatc |
28437987 |
T |
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| Q |
111 |
tcaagattctgaaacaaaataggttgaggcttttcaatgctaacctgagaaagcaaaacagttccactttctttcctgttattatcttcaaacaaggttg |
210 |
Q |
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| T |
28437986 |
tcaagattctgaaacaaaataggttgaggcttttcaatgctaacctgagaaagcaaaacagttccactctctttcctgttattatcttcaaacaaggttg |
28437887 |
T |
|
| Q |
211 |
ctaatctttgctgctgaagcttcaaatgcaaatcttggttcctacaactcaacgattcaatactagaagcaagactagtgcaa---------ttagcact |
301 |
Q |
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| T |
28437886 |
ctaatctttgctgctgaagcttcaaatgcaaatcttggttcctacaactcaatgattcaatactagaagcaagactagtgcaattagtgttattagcact |
28437787 |
T |
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| Q |
302 |
agtactcacattcataaagttcattccttgaattgctgcattttcatttccaccattaataaatccacctccatttgaagaagagaaaggatataaattt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28437786 |
agtactcacattcataaagttcattccttgaattgctgcattttcatttccaccattaataaatccacctccatttgaagaagagaaaggatataaattt |
28437687 |
T |
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| Q |
402 |
aaaccatttggatcaaggtgaaaacttgaagcacttg |
438 |
Q |
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| T |
28437686 |
aaaccatttggatcaaggtgaaaacttgaagcacttg |
28437650 |
T |
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