View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18932_low_7 (Length: 420)

Name: NF18932_low_7
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18932_low_7
NF18932_low_7
[»] chr2 (4 HSPs)
chr2 (1-389)||(18542602-18542990)
chr2 (198-336)||(18551478-18551616)
chr2 (51-168)||(18551122-18551243)
chr2 (1-38)||(18555958-18555995)
[»] chr1 (2 HSPs)
chr1 (346-378)||(50901584-50901616)
chr1 (346-384)||(18459267-18459305)
[»] chr5 (2 HSPs)
chr5 (346-384)||(25627060-25627097)
chr5 (340-381)||(7918508-7918548)
[»] chr3 (3 HSPs)
chr3 (346-384)||(27093397-27093434)
chr3 (341-378)||(10445181-10445218)
chr3 (340-368)||(10969945-10969973)
[»] chr4 (1 HSPs)
chr4 (346-378)||(37274501-37274533)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 18542602 - 18542990
Alignment:
Q  1 ggattgtagcacttatattatcaaatctaaatggataagaaataccattaaatttttagaaagcaaaaagtgactttcaagacccaagcataatttttac 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18542602 ggattgtaccacttatattatcaaatctaaatggataagaaataccattaaatttttagaaagcaaaaagtgactttcaagacccaagcataatttttac 18542701  T
Q  101 actcaagtttattttgccaaatcattttttacacgcattcaaatataacaattttattttaaagtaactttagtgctatcgaaacaaacacactaacaat 200  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  18542702 tctcaagtttattttgccaaatcattttttacatgcattcaaatataacaattttattttaaagtaactttagcactatcgaaacaaacacactaacaat 18542801  T
Q  201 tcaaaaaactaaacaaactttaagagctctaaagaaagagagatatgacgtgcaatgtcggatgggtattataacttgtctatatttaggaacttgcaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  18542802 tcaaaaaactaaacaaactttaagagctctaaagaaagagagatatgacgtgcaatgtcggatggatattataacttgtatatatttatgaacttgcaat 18542901  T
Q  301 aagaattaatttgattgtgtgattaagtttatggctgacgataatccacttgggttggcctagtggtaattggcttggaacttgaaagt 389  Q
     ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| | ||||||||    
T  18542902 cagaattaatttgattgtgtgattaagtttatggctgaggataacccacttgggttggcctagtgataattggcttgggagttgaaagt 18542990  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 198 - 336
Target Start/End: Original strand, 18551478 - 18551616
Alignment:
Q  198 aattcaaaaaactaaacaaactttaagagctctaaagaaagagagatatgacgtgcaatgtcggatgggtattataacttgtctatatttaggaacttgc 297  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||| |||| ||||||||  ||||||||||||| ||||| |||||||||||||||||    
T  18551478 aattcaaacaactaaacaaacatcaagagctctaaagaaagagagatgtgacatgcaatgtttgatgggtattataccttgtatatatttaggaacttgc 18551577  T
Q  298 aataagaattaatttgattgtgtgattaagtttatggct 336  Q
    ||  ||||||||||||| || |||| |||||||||||||    
T  18551578 aaccagaattaatttgactgcgtgaataagtttatggct 18551616  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 18551122 - 18551243
Alignment:
Q  51 aatttttagaaagcaaaaagtgactttcaagacccaagcataatttttacactcaagtttattttgccaaatcattttt---tacacgcattcaaatata 147  Q
    |||||||  ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||   || ||||||||||| |||    
T  18551122 aatttttgcaaagctaaaagagactttcaagacccaagcataatttttacgctcaagtttattttgacaaatcacttttacataaacgcattcaaacata 18551221  T
Q  148 a-caattttattttaaagtaac 168  Q
    | |||||||| |||||||||||    
T  18551222 atcaattttagtttaaagtaac 18551243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18555958 - 18555995
Alignment:
Q  1 ggattgtagcacttatattatcaaatctaaatggataa 38  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  18555958 ggattgtaccacttatattatcaaagctaaatggataa 18555995  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 50901584 - 50901616
Alignment:
Q  346 ccacttgggttggcctagtggtaattggcttgg 378  Q
    |||||||||||||||||||||||||||||||||    
T  50901584 ccacttgggttggcctagtggtaattggcttgg 50901616  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 18459305 - 18459267
Alignment:
Q  346 ccacttgggttggcctagtggtaattggcttggaacttg 384  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  18459305 ccacttgggttggtctagtggtaattggcttgggacttg 18459267  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 25627060 - 25627097
Alignment:
Q  346 ccacttgggttggcctagtggtaattggcttggaacttg 384  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  25627060 ccacttgggttggcctagtggt-attggcttggaacttg 25627097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 7918548 - 7918508
Alignment:
Q  340 gataatccacttgggttggcctagtggtaattggcttggaac 381  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  7918548 gataacccacttgggttggcctagtggt-attggcttggaac 7918508  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 27093434 - 27093397
Alignment:
Q  346 ccacttgggttggcctagtggtaattggcttggaacttg 384  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  27093434 ccacttgggttggcctagtggt-attggcttggaacttg 27093397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 10445218 - 10445181
Alignment:
Q  341 ataatccacttgggttggcctagtggtaattggcttgg 378  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  10445218 ataacccacttgggttggcctagtggcaattggcttgg 10445181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 368
Target Start/End: Complemental strand, 10969973 - 10969945
Alignment:
Q  340 gataatccacttgggttggcctagtggta 368  Q
    |||||||||||||||||||||||||||||    
T  10969973 gataatccacttgggttggcctagtggta 10969945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 37274533 - 37274501
Alignment:
Q  346 ccacttgggttggcctagtggtaattggcttgg 378  Q
    ||||||||||||||||||| |||||||||||||    
T  37274533 ccacttgggttggcctagtcgtaattggcttgg 37274501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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