View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18932_low_8 (Length: 317)
Name: NF18932_low_8
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18932_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 14275015 - 14275307
Alignment:
| Q |
19 |
ataccttcatctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14275015 |
ataccttcatctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatga |
14275114 |
T |
|
| Q |
119 |
tcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcatccatgaatagtattttgctgcgttttagcatgatccttcccaagcacag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14275115 |
tcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcatccatgaatagtattttgctgcgttttagcatgatccttcccaagcacag |
14275214 |
T |
|
| Q |
219 |
aagttgcctttgccccacactccaattgtctccaccatcaaccactgacaaaatagtataatgaacacatttcagttcatattttcttctcac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14275215 |
aagttgcctttgccccacactccaattgtctccaccatcaaccactaacaaaatagtataatgaacacatttcagttcatattttcttatcac |
14275307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 14312966 - 14313246
Alignment:
| Q |
19 |
ataccttcatctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatga |
118 |
Q |
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|||||| ||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
14312966 |
atacctgcatctatgaccaaaaccctgtcacaatccataactgttggtattctgtgagcaatgctaataattgtacgatctgcaaaatcctctctgatga |
14313065 |
T |
|
| Q |
119 |
tcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcatccatgaatagtattttgctgcgttttagcatgatccttcccaagcacag |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |
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| T |
14313066 |
tcttttgtattacagcatcagtttgcgaatcaactgatgctgttgcttcatccatgaataatattttgctgcgttttaacatgatccttcccaagcatag |
14313165 |
T |
|
| Q |
219 |
aagttgcctttgccccacactccaattgtctccaccatcaaccactgacaaaatagtataatgaacacatttcagttcata |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |
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| T |
14313166 |
aagttgcctttgccccacactccaattgtctccaccatcaaccactaacaaaatagtataataaacacatttcagctcata |
14313246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 14296935 - 14297213
Alignment:
| Q |
19 |
ataccttcatctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatga |
118 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||| ||||| || |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
14296935 |
ataccttcatctatgaccaaaaccttgtcacaatccataactgttggtattctatgagcaatgctaatgattgtacgatccgcaaagtcttctctgatga |
14297034 |
T |
|
| Q |
119 |
tcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcatccatgaatagtattttgctgcgttttagcatgatccttcccaagcacag |
218 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
14297035 |
tcttctgtaatacaacatcagtttgcgaatcaactgatgctgttgcttcatccatgaataatattttgctgcgttttagcatgatccttcccaagcatag |
14297134 |
T |
|
| Q |
219 |
aagttgcctttgccccacactccaattgtctccaccatcaaccactgacaaaatagtataatgaacacatttcagttca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | | |||||||||||||| |
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| T |
14297135 |
aagttgcctttgccccacactccaattgtctccaccatcaaccactaacaaaataatatagtaagcacatttcagttca |
14297213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 14307293 - 14307417
Alignment:
| Q |
26 |
catctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatgatcttttg |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||| ||| | ||||||||| |||| | || |||||||||||||| |
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| T |
14307293 |
catctatgaccaaaaccctgtcacagtccataactgtttgtattctgtgaacaatgttaacaaccgtacgatctacaaaatcctccctgatgatcttttg |
14307392 |
T |
|
| Q |
126 |
taatacagcatcagtttgcgaatca |
150 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
14307393 |
tattacagcatcagtttgcgaatca |
14307417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 14307422 - 14307458
Alignment:
| Q |
173 |
tgaatagtattttgctgcgttttagcatgatccttcc |
209 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
14307422 |
tgaataatattttgctgcgttttagcatgatccttcc |
14307458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 25880076 - 25880342
Alignment:
| Q |
19 |
ataccttcatctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatga |
118 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
25880076 |
atacctgcatctatgaccaaaaccttgtcacaatccataactgtaggtattctgtgagcaatgctaacaattgtacgatctgcaaagtcctctctgatga |
25880175 |
T |
|
| Q |
119 |
tcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcatccatgaatagtattttgctgcgttttagcatgatccttcccaagcacag |
218 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||||| ||||| || |
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|
| T |
25880176 |
tcttttgtactacaacatcagtttgtgaatcaactgatgctgttgcttcatccatgaataatattttgctacgttttaacatgattcttcctaagcatag |
25880275 |
T |
|
| Q |
219 |
aagttgcctttgccccacactccaattgtctccaccatcaaccactgacaaaatagtataatgaaca |
285 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
25880276 |
aagttgtctttgtcccacactccaattatctccaccatcaaccactaacaaaatagtataataaaca |
25880342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 39661151 - 39661383
Alignment:
| Q |
20 |
taccttcatctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatgat |
119 |
Q |
| |
|
||||| |||||| ||||| || | ||| |||||||| || || |||||||| |||||||| || ||||| |||||| | ||||||| |||||||||||| |
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| T |
39661151 |
tacctgcatctacaaccaacactcgatcgcagtccatgaccgttggtatcctatgagcaatactgatgatggtacgagccgcaaagtcttctctgatgat |
39661250 |
T |
|
| Q |
120 |
cttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcatccatgaatagtattttgctgcgttttagcatgatccttcccaagcacaga |
219 |
Q |
| |
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||| || | ||||||||| ||||| |||||||| || ||||| || || ||||| ||||| | | |||| | || ||||| | ||| || || ||||| |
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|
| T |
39661251 |
cttctgaattacagcatcggtttgagaatcaacagaagctgtagcctcgtccataaatagcagtctgctttgcttaagcataaccctccctaaacacagc |
39661350 |
T |
|
| Q |
220 |
agttgcctttgccccacactccaattgtctcca |
252 |
Q |
| |
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| ||||| |||||||||||||| || |||||| |
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|
| T |
39661351 |
aactgcctctgccccacactccagttatctcca |
39661383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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