View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18932_low_9 (Length: 296)
Name: NF18932_low_9
Description: NF18932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18932_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 17975888 - 17975621
Alignment:
| Q |
18 |
caacctcctcagcttcatctatatcttcatcttgaacatgatagtaatcacgatcatcaaaggtaaaaatgtcatttgaatccaccaattcttgataatc |
117 |
Q |
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| T |
17975888 |
caacctcctcagcttcatctatagcttcatcttgaacatgatagtaatcacgaccatcaaaggtaaaaatgtcgtttgaatccaccaattctcgataatc |
17975789 |
T |
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| Q |
118 |
agcatgcatttcttcaatgtcgtaaattccgtttggaattaatctcnnnnnnngtaaaatatttgagattaatttacaatcatt---gtcgtcgtcatca |
214 |
Q |
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| T |
17975788 |
agcatgcatttcttcaatgtcgtaaattccgtttggaattaatctctttttttgtaaaatatttgagattaatttacaatcattgtcgtcgtcgtcatca |
17975689 |
T |
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| Q |
215 |
tcgccatcatctagctcatcgatgtccccgtcatcctcgtactcgtcatggttttcgttgtcatcatc |
282 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||| ||||| | |||||||||||||| |
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| T |
17975688 |
tcgccatcatctaactcattgatgtccccgtcatcctcgtactcgacatggctgtcgttgtcatcatc |
17975621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 17983528 - 17983261
Alignment:
| Q |
18 |
caacctcctcagcttcatctatatcttcatcttgaacatgatagtaatcacgatcatcaaaggtaaaaatgtcatttgaatccaccaattcttgataatc |
117 |
Q |
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||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||| | ||||| ||||||||||||| ||||||| |
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| T |
17983528 |
caacctcctcagcttcatctatatcttcatctttataatgataataatcacgaccatcaaaggtaaaaatattatttggatccaccaattctcgataatc |
17983429 |
T |
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| Q |
118 |
agcatgcatttcttcaatgtcgtaaattccgtttggaattaatctcnnnnnnngtaaaatatttgagattaatttacaatcatt---gtcgtcgtcatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||| ||||||||||||| |
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| T |
17983428 |
agcatgcatttcttcaatgtcgtaaattccgtttggaattaatctctttttttgtaaaatatttgtgattaacctacgatcattgtcgtcgtcgtcatca |
17983329 |
T |
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| Q |
215 |
tcgccatcatctagctcatcgatgtccccgtcatcctcgtactcgtcatggttttcgttgtcatcatc |
282 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
17983328 |
tcgccatcatctggctcattgatgtccccgtcatcctcgtactcgtcatggctgtcgttgtcatcatc |
17983261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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