View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18933_high_2 (Length: 397)
Name: NF18933_high_2
Description: NF18933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18933_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 41248731 - 41249113
Alignment:
| Q |
10 |
attatacttttaaatcggtcacgccatcgtcaagatggaacaacattacaaggctgttgtctcccgtcaaatcaaaaagacgatccttctattaagtttg |
109 |
Q |
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| T |
41248731 |
attatacttttaaatcggtcacgccatcgtcaagatggaacaacattacaaggctgttgtctcccgtcaaattaaaaacacgatcctt-----aagtttg |
41248825 |
T |
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| Q |
110 |
agatggtaaatggtagccatgaattagagaaaaatacagaagcaagtgagaaaaatgccaccgaatataagtttgttgtagttacacctaaatcacaaat |
209 |
Q |
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| T |
41248826 |
agatggtaaatggtagccatgaattagagaaaaatacagtcgcaagtgagaaaaatgccaccgaatataagtttgttgtagttacacctaaatcacaaat |
41248925 |
T |
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| Q |
210 |
gtacaaattgagaaaaatatagaaaactccttttgaaagttgagcactacaacacccaaattaagagtggggacttaaatttgtttcgcataggctacaa |
309 |
Q |
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| T |
41248926 |
gtacaaattgagaaaaatatagaaaactccttttgaaagttgagcactacaacacccaaattaagagtggggacttaaatttgtttcgcataggctacaa |
41249025 |
T |
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| Q |
310 |
tttggccccccttttccaacactgctatatatctcgaggaaaagcttctcgaagtgatcagtcacgaaacacaattcaaccaatcaaa |
397 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249026 |
tttggccccccttttccagcactgctatatatctcgaggaaaagcttctcgaagtgatcagtcacgaaacacaattcaaccaatcaaa |
41249113 |
T |
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