View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18933_high_7 (Length: 240)
Name: NF18933_high_7
Description: NF18933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18933_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43446393 - 43446172
Alignment:
| Q |
1 |
catagtcattcaaatccccaatatcattcaagatcaatactgcaatattcttgtgaaaattgtttgatgccaaggacaaccccatattctccttgagaac |
100 |
Q |
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| T |
43446393 |
catagtcattcaaatccccaatatcgttcaagatcaatactgcaatattcttgtgaaaattgtttgatgccaaggacaaccccatattctccttgagaac |
43446294 |
T |
|
| Q |
101 |
tcataatttctatgatactcacagttattgcttaatttagttaacttctacttggtcataagtaaataaacacctcacctaaaatcttacatacttgaac |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43446293 |
tcataatttctatgatact--cagttattgcttaatttagttaacttctacttggtcataagtaaataaacacctcacctaaaatcttacatacttgaac |
43446196 |
T |
|
| Q |
201 |
aaaatttactttaatataaataac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
43446195 |
aaaatttactttaatataaataac |
43446172 |
T |
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