View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18933_low_1 (Length: 519)
Name: NF18933_low_1
Description: NF18933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18933_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 332
Target Start/End: Original strand, 30471579 - 30471862
Alignment:
| Q |
51 |
gtaaggagaatgccacataggcatgcttgctctttgatgctgacttggctatatttatagggcccacttcaaattaaattgattaattaatcaataatca |
150 |
Q |
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| T |
30471579 |
gtaaggagaatgccacataggcatgcttgctatttgatactgacttggctatatttatagggcccacttcaaattaaattgattaattaatcaataaaca |
30471678 |
T |
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| Q |
151 |
tgtttatcaatttgattaatttaacagtaaacaaattgatttattgagtttggtnnnnnnnnnnnnnnnttaatttagttaacaaaataaaagatatata |
250 |
Q |
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| T |
30471679 |
tgtttatcaatttgattaatttaacagtaaacaaattgatttattgagtttggtaaaaaaaactaaaaattaatttagttaacgaaataaaagatatata |
30471778 |
T |
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| Q |
251 |
tctcataa--nnnnnnnnnaaagatatatctcgtaaccgtaccgtagatgttaaaatatgagagtaacatttgatatgctacaa |
332 |
Q |
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| T |
30471779 |
tctcataattattttttttaaagatatatctcgtaaccgtaccgtagatgttaaaatatgagagtaacatttgatatgctacaa |
30471862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 337 - 504
Target Start/End: Original strand, 30472306 - 30472480
Alignment:
| Q |
337 |
aaatatgaggtttgctagttttgtttattgttcgaaacaaaatggagtatgtacttcatatttatcctcataaaaatta-cagtgcct---tgt-cattc |
431 |
Q |
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| T |
30472306 |
aaatatgaggtttgctagttttgtttattgttcgaaacaaaatggagtatgtacttcgtatttatcctcataaaaattataagtgaatatatgtgaattc |
30472405 |
T |
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| Q |
432 |
tagaaggatgttgtgaagaaatgttgttcat--aacgaggtacacaagagtattttgttattctggtgaatattg |
504 |
Q |
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| T |
30472406 |
aagaaggatgatgtgaagaaatgtcgttcatacaacgaggtatacgagagtattttgttattctagtgaatattg |
30472480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 30473644 - 30473771
Alignment:
| Q |
56 |
gagaatgccacataggcatgcttgctctttgatgctgacttggctata-tttatagggcccacttcaaattaaattgattaattaatcaat-aatcatgt |
153 |
Q |
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| T |
30473644 |
gagaatgccacataggcatgcttgctatttgatgctaacttggctatagtttatagggcccgcttaaaattaaattgattaactcatcaataaatcatgt |
30473743 |
T |
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| Q |
154 |
ttatcaatttgattaatttaacagtaaa |
181 |
Q |
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| T |
30473744 |
ttatcaatttgattaattcaacagtaaa |
30473771 |
T |
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