View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18933_low_5 (Length: 257)
Name: NF18933_low_5
Description: NF18933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18933_low_5 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 41249298 - 41249433
Alignment:
| Q |
103 |
atcacacaaatgaattgaacacaacatctttatccaaaacctaagacataagttaaaatgctcaacatccactattgtatccaacgtgaaactcttactc |
202 |
Q |
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| T |
41249298 |
atcacacaagtgagttgaacacaacaactttatccaaaacctaacacataagttaaaatgctcaacatccacttttgtatccaatgtgaaactcttactc |
41249397 |
T |
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| Q |
203 |
agaaatgaaatgatacaggaacacaaacaaacttgttattg |
243 |
Q |
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| T |
41249398 |
a-----gaaatgatacaggaacacaaacaaacttgttattg |
41249433 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 41249145 - 41249203
Alignment:
| Q |
43 |
agcagttcatcaaataaatgtaaaatctaagggatgttatgctgccaactcgtttaagc |
101 |
Q |
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| T |
41249145 |
agcagttcatcaaataaatgtaaaatctaagggatgttatgctgccaactcgtttaagc |
41249203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 90019 - 89979
Alignment:
| Q |
51 |
atcaaataaatgtaaaatctaagggatgttatgctgccaac |
91 |
Q |
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| T |
90019 |
atcaaataaatgtaaaatctaaggtatgttatgctaccaac |
89979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 34482516 - 34482473
Alignment:
| Q |
43 |
agcagttcatcaaataaatgtaaaatctaagggatgttatgctg |
86 |
Q |
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| T |
34482516 |
agcagtccatcaaataaatgtgaaatctaaaggatgttatgctg |
34482473 |
T |
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