View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18934_high_11 (Length: 477)

Name: NF18934_high_11
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18934_high_11
NF18934_high_11
[»] chr4 (30 HSPs)
chr4 (1-466)||(2467170-2467635)
chr4 (1-428)||(2477249-2477673)
chr4 (31-418)||(5106298-5106686)
chr4 (214-424)||(2525425-2525632)
chr4 (38-421)||(2490801-2491196)
chr4 (280-423)||(2621400-2621540)
chr4 (225-336)||(2486062-2486173)
chr4 (39-160)||(2525703-2525824)
chr4 (247-354)||(5102293-5102400)
chr4 (238-424)||(2533983-2534166)
chr4 (221-424)||(2518903-2519103)
chr4 (47-149)||(2486264-2486366)
chr4 (222-424)||(5035292-5035491)
chr4 (39-166)||(5035562-5035689)
chr4 (287-412)||(2391263-2391385)
chr4 (50-163)||(2519176-2519289)
chr4 (25-103)||(5102065-5102143)
chr4 (280-417)||(2547221-2547355)
chr4 (372-412)||(2367989-2368029)
chr4 (205-260)||(2361143-2361198)
chr4 (287-342)||(2381635-2381690)
chr4 (49-168)||(2621163-2621282)
chr4 (45-103)||(2168019-2168077)
chr4 (198-252)||(2376388-2376442)
chr4 (41-107)||(2381371-2381437)
chr4 (297-342)||(2361217-2361262)
chr4 (289-342)||(2482529-2482582)
chr4 (372-412)||(2373555-2373595)
chr4 (364-412)||(2546826-2546874)
chr4 (372-412)||(12124527-12124567)
[»] chr7 (1 HSPs)
chr7 (39-103)||(2576388-2576452)


Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 2467635 - 2467170
Alignment:
Q  1 tgctagcttctaacctctctgctgtctctctccgtgacagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467635 tgctagcttctaacctctctgctgtctctctccgtgacagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgatt 2467536  T
Q  101 ctccgtctcgatttccgacggaacaatccctttacttcatcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctcggtagaaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467535 ctccgtctcgatttccgacggaacaatccctttacttcatcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctcggtagaaagt 2467436  T
Q  201 gacctcaacgcacttcttaacaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgag 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467435 gacctcaacgcacttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgag 2467336  T
Q  301 ctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467335 ctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccc 2467236  T
Q  401 tctactcgaagagctcatccttacggaccttgattatcatacttattctgtgcttgatggtgatga 466  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467235 tttactcgaagagctcatccttacggaccttgattatcatacttattctgtgcttgatggtgatga 2467170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 2477673 - 2477249
Alignment:
Q  1 tgctagcttctaacctctctgctgtctctctccgtgacagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgatt 100  Q
    |||||| ||||||||| || ||| ||||||||||| ||||||||||||||||||| || ||||||||| ||||| ||||||| |||||||||||||||||    
T  2477673 tgctagattctaacctttccgctatctctctccgtaacagtttcaagtctctctcggttgtctcaaaagagtttctgtccataaccaacagtcttcgatt 2477574  T
Q  101 ctccgtctcgatttccgacggaacaatccctttacttcatcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctcggtagaaagt 200  Q
    ||| ||  | ||||||||   ||| |||||||  ||||||| ||||||| |||||||||| ||  ||| |||  |  |||||||||||     |||||||    
T  2477573 ctctgtgacaatttccgatcaaaccatcccttcccttcatcctctctttcaaaggttccctaacgtcacatccctaaacatcactctc---agagaaagt 2477477  T
Q  201 gacctcaacgcacttcttaacaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgag 300  Q
    |||||  | |  ||||||| | |||| ||||||||  || | ||||||| ||| ||  |||||||||||||||  |||||||||| | |||||||| |||    
T  2477476 gaccttgatgagcttcttacccaaatatccactttagctatagacctcagatcgctagctctctaccaccccaccacggttcctgtaaatgggttgagag 2477377  T
Q  301 ctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgat-atcgacaagaacgatcttttcttcattgctgattgtttcc 399  Q
    |||| || ||| ||||||||||||| |||||  | ||  |||||| | |||| || ||| ||||||| ||| ||||| ||||||||| || |||||||||    
T  2477376 ctttgtcaaaaaagatgaaaaatttaacatcttttaccggttaccaatttgc-ttcgatgatcgacaggaatgatctcttcttcatttctaattgtttcc 2477278  T
Q  400 ctctactcgaagagctcatccttacggac 428  Q
    || | || ||||| |||||||| ||||||    
T  2477277 ctttgctagaagaactcatcctcacggac 2477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 31 - 418
Target Start/End: Original strand, 5106298 - 5106686
Alignment:
Q  31 tccgtgacagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccc 130  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||| ||||||||| ||| | ||  |  |   ||| |||||    
T  5106298 tccgtaacagtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccc 5106397  T
Q  131 tttacttcatcgtctctttgaaaggttccccaatatcagatcaattg----acatcactctctcggtagaaagtgacctcaacgcacttcttaacaaaat 226  Q
    |||  ||||||| |||||  ||||||||||  |  ||| |||| |      |||||||||||||    | |   ||||||||||  |||||  || ||||    
T  5106398 tttcattcatcgcctcttcaaaaggttcccttacgtcacatcactcactcaacatcactctctcctccgga---gacctcaacgagcttctgtaccaaat 5106494  T
Q  227 ctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaatttg 326  Q
    |||  ||||||||||  |  ||||||  ||| |||||||||||||||| | | |||||  |  |||||||||||||||||||  | ||||||||||||||    
T  5106495 ctctgctttccctttaaatatcaaattgctcgctctctaccaccccattaagtttcctaaaattgggttgcgagctttctccctaaagatgaaaaatttg 5106594  T
Q  327 acatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctctactcgaagagctcat 418  Q
    |||||  |||||||||||||||||||||  | | | |||||||  ||||| |||||||||||||||||||||||| |||||||||| |||||    
T  5106595 acatctatcacttgttaccgaattgcttcgggtgtagacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat 5106686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 424
Target Start/End: Complemental strand, 2525632 - 2525425
Alignment:
Q  214 ttcttaacaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaaga 313  Q
    |||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||   | |||||||  | ||| |||||| | ||| |||||  |    
T  2525632 ttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaa 2525533  T
Q  314 gatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctctactcgaagag 413  Q
     ||||||||||||||||| ||||||||||| | || ||   ||  |||  ||||||| |||||  ||||||||||||||||||||||||||||||||||     
T  2525532 aatgaaaaatttgacatctctcacttgttatc-aactgagatt--tattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaagaa 2525436  T
Q  414 ctcatccttac 424  Q
    |||||||||||    
T  2525435 ctcatccttac 2525425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 421
Target Start/End: Complemental strand, 2491196 - 2490801
Alignment:
Q  38 cagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttactt 137  Q
    |||||||| |||||||||  ||||||||||||||||| ||||||| || ||| |||| ||||| || ||| | || ||||| | |||||||||||| |||    
T  2491196 cagtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctt 2491097  T
Q  138 catcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctc-----------gg----tagaaagtgacctcaacgcacttcttaaca 222  Q
     |||||||||||||||||||||| || || | ||||||  | ||||| |||||           ||    |||||  |||||||| ||  ||||||        
T  2491096 aatcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttggac 2490997  T
Q  223 aaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaa 322  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| | || || | |||||| ||| |||  ||||||||||| |||     |||||||||    
T  2490996 aaatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaa 2490897  T
Q  323 tttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctctactcgaagagctcatcct 421  Q
    ||||||||| ||||||||||| |||||    ||   |||| ||||||| ||||| || || |||||||||||||||||| ||||||| || ||||||||    
T  2490896 tttgacatctctcacttgttatcgaatgaggtt---tatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcct 2490801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 280 - 423
Target Start/End: Original strand, 2621400 - 2621540
Alignment:
Q  280 ttcctgcagatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatctttt 379  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||   |  | | |||  |||||| ||||| ||    
T  2621400 ttcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaat---taataaaatccgcaagaatgatctatt 2621496  T
Q  380 cttcattgctgattgtttccctctactcgaagagctcatcctta 423  Q
    |||| ||||||||||||||||| |||||||||| |||| |||||    
T  2621497 cttccttgctgattgtttccctttactcgaagaactcaacctta 2621540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 2486173 - 2486062
Alignment:
Q  225 atctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaatt 324  Q
    ||||||||||||||||||||||||||||| |||||||||||| | ||||| | | |||||||| |||   |||||||||| |||||| ||||||||||||    
T  2486173 atctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatt 2486074  T
Q  325 tgacatcactca 336  Q
    ||||||| ||||    
T  2486073 tgacatctctca 2486062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 2525824 - 2525703
Alignment:
Q  39 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc 138  Q
    |||||||  ||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||  ||| | || ||| | | ||| |||||||| |||     
T  2525824 agtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaactatcccttttctta 2525725  T
Q  139 atcgtctctttgaaaggttccc 160  Q
    ||||||||||||||||||||||    
T  2525724 atcgtctctttgaaaggttccc 2525703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 5102293 - 5102400
Alignment:
Q  247 tcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgttaccg 346  Q
    ||||||| ||| |||||||||||||||| | | ||||| || | ||||||||||| |||||| || |||||||||||||||||||  |||||||||||||    
T  5102293 tcaaatcgctcgctctctaccaccccattaagcttcctacaaaagggttgcgagcattctcccaaaagatgaaaaatttgacatctatcacttgttaccg 5102392  T
Q  347 aattgctt 354  Q
    ||||||||    
T  5102393 aattgctt 5102400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 424
Target Start/End: Complemental strand, 2534166 - 2533983
Alignment:
Q  238 ctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcac 337  Q
    |||| ||||||||||| |||||||||||||||||    |  ||||||| | ||| ||| |||||||| |||||  ||||||||||||| ||||| |||||    
T  2534166 ctttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcac 2534067  T
Q  338 ttgttaccgaatt-gcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctctactcgaagagctcatccttac 424  Q
    |||||| | |||  |||    ||||| ||||||| ||||| ||||| |||||||||||||||||| |||| ||||| |||||||||||    
T  2534066 ttgttatcaaatgagct----atatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaactcatccttac 2533983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 424
Target Start/End: Complemental strand, 2519103 - 2518903
Alignment:
Q  221 caaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaa 320  Q
    |||||| | |||||||||||| ||||||| ||| |||||||||||||| || || ||  |||||  ||| ||||||| |||||| ||  || | ||||||    
T  2519103 caaaatatgcactttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaa 2519004  T
Q  321 aatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctctactcgaagagctcatcc 420  Q
    ||||||||||  |||||||||||   |||    |   ||||| ||||||| ||||| |||||||||||||||||||||||| ||||| |||| |||||||    
T  2519003 aatttgacatatctcacttgttattaaatgaaat---atatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatcc 2518907  T
Q  421 ttac 424  Q
    ||||    
T  2518906 ttac 2518903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 2486366 - 2486264
Alignment:
Q  47 gtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttcatcgtctc 146  Q
    |||||||||| ||||||||||||||||| ||||||| |||||| |||| |||||||| ||| | || |||||   |||||||||||| ||||||||||||    
T  2486366 gtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctc 2486267  T
Q  147 ttt 149  Q
    |||    
T  2486266 ttt 2486264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 424
Target Start/End: Complemental strand, 5035491 - 5035292
Alignment:
Q  222 aaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaa 321  Q
    ||||||||| ||| ||||||  |||||||||| |||||||| |||||| |  | | |||||||| | ||| |||||||||||| ||| |  |||||||||    
T  5035491 aaaatctccgcttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccgagaagatgaaaa 5035392  T
Q  322 atttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctctactcgaagagctcatcct 421  Q
     ||| || || ||| ||||||| | |||    |||   ||| ||||||| ||||||||||| |||||||||||||||||| |||||||||| || |||||    
T  5035391 gtttaacgtctctcgcttgttatcaaatgagattt---atcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatcct 5035295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 5035689 - 5035562
Alignment:
Q  39 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc 138  Q
    ||||||| |||||| ||| |||| |||||||||||| | ||||| |||||| ||||||||||||  |||   || || || | |||||||||||| |||     
T  5035689 agtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttcctta 5035590  T
Q  139 atcgtctctttgaaaggttccccaatat 166  Q
     ||||||||||||||||||||| |||||    
T  5035589 gtcgtctctttgaaaggttccctaatat 5035562  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 412
Target Start/End: Original strand, 2391263 - 2391385
Alignment:
Q  287 agatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcatt 386  Q
    ||||||||| |||||||| |||||| |||||||||||||||| || || ||||||| |||||||  ||||   ||| ||||||| ||| | |||||||||    
T  2391263 agatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt-ccgaatt--tttttggatcaacaagaaggatatcttcttcatt 2391359  T
Q  387 gctgattgtttccctctactcgaaga 412  Q
    | |||||| |||||| ||||||||||    
T  2391360 gttgattgcttccctttactcgaaga 2391385  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 2519289 - 2519176
Alignment:
Q  50 tctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttcatcgtctcttt 149  Q
    |||||| || || |||||||||||| ||||||| |||||| || |||||| ||| ||| | || || ||   |||||||||||| |||||||||||||||    
T  2519289 tctctctgttgtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctcttt 2519190  T
Q  150 gaaaggttccccaa 163  Q
    || |||||||||||    
T  2519189 gataggttccccaa 2519176  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 5102065 - 5102143
Alignment:
Q  25 tctctctccgtgacagtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctc 103  Q
    ||||||| || || ||||||||||||||||| | |||||| |||||||||||||| || || || ||||||||||||||    
T  5102065 tctctcttcgagatagtttcaagtctctctctggcgtctcgaaacagtttttgtctatcactaatagtcttcgattctc 5102143  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 417
Target Start/End: Complemental strand, 2547355 - 2547221
Alignment:
Q  280 ttcctgcagatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatctttt 379  Q
    |||||||| |||||||||||||||| ||  || |||||||||||||||| || |||| ||||| |  |||  | ||   ||||  |||||| ||| | ||    
T  2547355 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctt---tatcagcaagaatgatttatt 2547259  T
Q  380 cttcattgctgattgtttccctctactcgaagagctca 417  Q
    |||||||||||||||||||||| |||| ||||| ||||    
T  2547258 cttcattgctgattgtttccctttacttgaagaactca 2547221  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 2367989 - 2368029
Alignment:
Q  372 gatcttttcttcattgctgattgtttccctctactcgaaga 412  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  2367989 gatctcttcttcattgctgattgtttccctttactcgaaga 2368029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 2361143 - 2361198
Alignment:
Q  205 tcaacgcacttcttaacaaaatctccactttccctttggacctcaaatccctcact 260  Q
    ||||||||||||| | |||||| ||||||||||||||  |||||||||| ||||||    
T  2361143 tcaacgcacttctcaccaaaatatccactttccctttaaacctcaaatcactcact 2361198  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 2381635 - 2381690
Alignment:
Q  287 agatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgtt 342  Q
    ||||||||| |||||||| |||||| |||||||||||||||| || || |||||||    
T  2381635 agatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 168
Target Start/End: Original strand, 2621163 - 2621282
Alignment:
Q  49 ctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttcatcgtctctt 148  Q
    |||||||| |||| || ||||||||||||||||| |||||| |||| || |||||| || | || |||||   ||| ||||||||  ||| ||| |||||    
T  2621163 ctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 2621262  T
Q  149 tgaaaggttccccaatatca 168  Q
     || |||||||| |||||||    
T  2621263 cgacaggttccctaatatca 2621282  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 2168077 - 2168019
Alignment:
Q  45 aagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctc 103  Q
    ||||||||||| || ||||| || |||||| ||||||| ||||| ||||||||||||||    
T  2168077 aagtctctctcagttgtctccaagcagtttctgtccatcaccaatagtcttcgattctc 2168019  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 2376388 - 2376442
Alignment:
Q  198 agtgacctcaacgcacttcttaacaaaatctccactttccctttggacctcaaat 252  Q
    ||||||||| |||| ||| ||| | ||||||||||||||||||| ||||||||||    
T  2376388 agtgacctcgacgctcttgttacccaaatctccactttccctttagacctcaaat 2376442  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 2381371 - 2381437
Alignment:
Q  41 tttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtc 107  Q
    |||||||||||| ||| ||||||| ||||||||  | || || ||||||||||| ||||||||||||    
T  2381371 tttcaagtctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgattctccgtc 2381437  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  297 cgagctttctccaaagagatgaaaaatttgacatcactcacttgtt 342  Q
    |||||||| |||||| | ||||||||||||||||| ||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 2482582 - 2482529
Alignment:
Q  289 atgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgtt 342  Q
    |||||||| ||||| | || ||| ||||||||||||||||||| ||||||||||    
T  2482582 atgggttgagagctctatctaaaaagatgaaaaatttgacatctctcacttgtt 2482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 2373555 - 2373595
Alignment:
Q  372 gatcttttcttcattgctgattgtttccctctactcgaaga 412  Q
    ||||| |||||||||||||||||||||||| | ||||||||    
T  2373555 gatctcttcttcattgctgattgtttccctttgctcgaaga 2373595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 2546874 - 2546826
Alignment:
Q  364 acaagaacgatcttttcttcattgctgattgtttccctctactcgaaga 412  Q
    ||||||| ||| | |||||||||||||||||||| ||| ||||||||||    
T  2546874 acaagaatgatttattcttcattgctgattgttttcctttactcgaaga 2546826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 12124567 - 12124527
Alignment:
Q  372 gatcttttcttcattgctgattgtttccctctactcgaaga 412  Q
    ||||| |||||||||||||||||||||||| |||| |||||    
T  12124567 gatctcttcttcattgctgattgtttccctttactagaaga 12124527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 2576388 - 2576452
Alignment:
Q  39 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctc 103  Q
    |||||||||| ||||| |||| |||  ||||||||||| ||||| |||||  |||||||||||||    
T  2576388 agtttcaagtatctcttcgtcatcttgaaacagtttttatccatcaccaatcgtcttcgattctc 2576452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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