View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_high_13 (Length: 433)
Name: NF18934_high_13
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 35477808 - 35478210
Alignment:
| Q |
14 |
agaggactatgtgggtaggtgtcacgttggggataaataaagagtcatattaaccggtgtcttaggacatcggttaaggaagccaacaaaaaaggtttta |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
35477808 |
agaggactatgtgggtaggtgtcagtttggggataaataaagggtcatactaaccggtgtctcaggacatcggtgaaggaagccaacaaaaaaggtttta |
35477907 |
T |
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| Q |
114 |
aattgaaaatgatacctttttgattcttgaagaattgattacataatttgcaatgcaatagctcgtatatttgcttccttaaccattaagtggccaaagt |
213 |
Q |
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| T |
35477908 |
aattgaaaatgatacttttttgattcttgaagaattgattacacaatttgcaatgcaatagctcgtatatttgcttccttaaccattaagtggccaaagt |
35478007 |
T |
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| Q |
214 |
aaagagtcactctagaaagtcaaatttgtggaccggcttgaaccgcatgtttggtaactttggtgtcagtaattaaaaactcagaaaagttaccagaact |
313 |
Q |
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| T |
35478008 |
aaagagtcactctagaaagtcaaatttgtggaccggcttgaaccgcatgtttggtaactttggtgtcagtaattaaaaactcagaaaagttaccagaact |
35478107 |
T |
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| Q |
314 |
gatgaagggacttatgtgtcattttgtaaagacttggtttgtgcctgcccttgtttgaagagctagttctgttttgttgcagcagcagacttatgtatag |
413 |
Q |
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| T |
35478108 |
gatgaagggacttatgtgtcattttgtaaagacttggtttgtgcctgcccttgtttgaagagctagttctgttttgttgcagcagcagacttatgtatag |
35478207 |
T |
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| Q |
414 |
ggt |
416 |
Q |
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| T |
35478208 |
ggt |
35478210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 31862581 - 31862494
Alignment:
| Q |
111 |
ttaaattgaaaatgatacctttttgattcttgaagaattgattacataatttgcaatgcaatagctcgtatatttgcttccttaacca |
198 |
Q |
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| T |
31862581 |
ttaaattaaaaatgacacttttttgactcttgaagcattgattagacaattttcaatgcaaaagtttctatatttgcttccttaacca |
31862494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 31786724 - 31786785
Alignment:
| Q |
101 |
aaaaaaggttttaaattgaaaatgatacctttttgattcttgaagaattgattacataattt |
162 |
Q |
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| T |
31786724 |
aaaaaaagttttaaattgaaaatgacactttattgatttttgaaaaattgattacataattt |
31786785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 14941650 - 14941736
Alignment:
| Q |
111 |
ttaaattgaaaatgatacctttttgattcttgaagaattgattacataatttgcaatgcaatagctcgtatatttgcttccttaacca |
198 |
Q |
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| T |
14941650 |
ttaaattaaaaatgacacttttttgacttttgaa-aattgattacacaattttcaatgtaaaagctactatatttgcttccttaacca |
14941736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 16464156 - 16464104
Alignment:
| Q |
146 |
aattgattacataatttgcaatgcaatagctcgtatatttgcttccttaacca |
198 |
Q |
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||||||||||| ||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
16464156 |
aattgattacacaatttccaatacaaaagctactatatttgcttccttaacca |
16464104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 45996811 - 45996877
Alignment:
| Q |
57 |
gtcatattaaccggtgtcttag-gacatcggttaaggaagccaacaaaaaaggttttaaattgaaaa |
122 |
Q |
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||||||||||||||||||| | |||| ||||||||||| || |||||||||||||||||||||| |
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| T |
45996811 |
gtcatattaaccggtgtctccgagacaccggttaaggaaataaaaaaaaaaggttttaaattgaaaa |
45996877 |
T |
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