View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_high_14 (Length: 375)
Name: NF18934_high_14
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 35773087 - 35772731
Alignment:
| Q |
17 |
aacaaatgcacatgacatgcaaatatgtgttttgcatatacatacccttagggaattcttcttgttattatttggaggatgatcagaaggcagaggagga |
116 |
Q |
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| T |
35773087 |
aacaaatgcacatgacatgcaaatatgtgttttgcatatacatacccttagggaattcttcttgttattatttggaggatgatcagaaggcagaggagga |
35772988 |
T |
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| Q |
117 |
gtttttgaagttgcattataagaatgatgattattgtgatcagtgatgagcctatactcatgcataatccaattagttttaactccttttggtggcttcc |
216 |
Q |
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| T |
35772987 |
gtttttgaagttgcattataagaatgatgattattgtgatcagtgatgagcctgtactcatgcataatccaattagttttcactccttttggtggcttcc |
35772888 |
T |
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| Q |
217 |
ctccataaaaaacaagtgctttcttaactccaactttctgattcccatcagatgttaatataggcttatcagttccagtagctttccaatacccagaagt |
316 |
Q |
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| T |
35772887 |
ctccataaaaaacaagtgctttcttaactccaactttctgattcccatcagatgttaatataggcttatcagttccagtagctttccaatacccagaagt |
35772788 |
T |
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| Q |
317 |
tgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaaaaa |
373 |
Q |
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| T |
35772787 |
tgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaaaaa |
35772731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 364
Target Start/End: Complemental strand, 33762484 - 33762285
Alignment:
| Q |
165 |
agcctatactcatgcataatccaattagttttaactccttttggtggcttccctccataaaaaacaagtgctttcttaactccaactttctgattcccat |
264 |
Q |
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| T |
33762484 |
agcctatactcatgcatgatccaattggttttgatacctcttggtggtttcccaccatagaaaaccaaagctttcttcacaccaactttttgtgtcccac |
33762385 |
T |
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| Q |
265 |
cagatgttaatataggcttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgg |
364 |
Q |
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| T |
33762384 |
cagaagttaaaacaggcttatcggtaccagttgccttccaataaccagaagttgcagccctgtttggcctagctccattcggatacttcctgtcccttgg |
33762285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 32967544 - 32967450
Alignment:
| Q |
281 |
cttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaaaaagt |
375 |
Q |
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| T |
32967544 |
cttatcagtgccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagt |
32967450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 20701888 - 20701848
Alignment:
| Q |
170 |
atactcatgcataatccaattagttttaactccttttggtg |
210 |
Q |
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| T |
20701888 |
atactcatgcataatccaattagtttttgttccttttggtg |
20701848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 44371283 - 44371255
Alignment:
| Q |
177 |
tgcataatccaattagttttaactccttt |
205 |
Q |
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| T |
44371283 |
tgcataatccaattagttttaactccttt |
44371255 |
T |
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