View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_high_17 (Length: 315)
Name: NF18934_high_17
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 6117806 - 6117527
Alignment:
| Q |
13 |
atactagtactattattgttgcaattgtaggtcagtattattaattttggttttgtccatggatatgaatttaaaagatgatggattttttggataggcc |
112 |
Q |
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| T |
6117806 |
atactagtactattattgttgcaattgtaggccagtattattaattttggttttgaccatggatatgaatttaaaagatgatggattttttggataggcc |
6117707 |
T |
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| Q |
113 |
atatcaaacctagctataaccttctattctacaaggacgattatcactactaacaataataatgttggtaaagatatatgt--tttgaatgcatatgttt |
210 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
6117706 |
atatcaaaccta----taaccttctactctacaaggacgattatcactactaacaataataatgttggtaaagatatatatattttgaatgcatatgttt |
6117611 |
T |
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| Q |
211 |
ataagtttcttgtatagtcctttaatggcactttagtcaactgcaaatttttctatgtatacaatcgtctacatattgtaaagg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6117610 |
ataagtttcttgtatagtcctttaatggcactttagtcaactgcaaatttttctatgtatacaatcgtctacatattgtaaagg |
6117527 |
T |
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