View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18934_high_19 (Length: 284)
Name: NF18934_high_19
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 41074180 - 41073926
Alignment:
| Q |
14 |
gtttatactctggatcaaacaaattggaacacgtatcaaactctacaccaacaaattgattgtaagcattgttatcatcaacaactccaaggtttgcacc |
113 |
Q |
| |
|
|||||||||||||||||||| || |||| | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41074180 |
gtttatactctggatcaaactaaccggaaaaggcatcaaactctacaccaacaaattgattgtaagcattgttatcgtcaacaactccaaggtttgcacc |
41074081 |
T |
|
| Q |
114 |
atttgaggccggaggaatattggctttatctgttggtgtaagaaagaagataaatccactgcctggataaaaaattttgaagttcgacacttggaatgta |
213 |
Q |
| |
|
|| ||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41074080 |
atatgatgtcggaggaatattggctttatctgttggtgtcagaaagaagataaatccactgcctggataaaagtttttgaagttcgacacttggaatgta |
41073981 |
T |
|
| Q |
214 |
aaggaagtgacaaagctcgccacgtttccggtggttttatcccagatgggcactg |
268 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41073980 |
aaggaagtgacaaagctcgccacgttgccggtggttttatcccagatgggcactg |
41073926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 41037868 - 41037834
Alignment:
| Q |
49 |
tcaaactctacaccaacaaattgattgtaagcatt |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41037868 |
tcaaactctacaccaacaaattgattgtaagcatt |
41037834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 41043910 - 41043876
Alignment:
| Q |
49 |
tcaaactctacaccaacaaattgattgtaagcatt |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41043910 |
tcaaactctacaccaacaaattgattgtaagcatt |
41043876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 41066058 - 41066003
Alignment:
| Q |
49 |
tcaaactctacaccaacaaattgattgtaagcattgttatcatcaacaactccaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || |||||| |||||||| |
|
|
| T |
41066058 |
tcaaactctacaccaacaaattgattgtaagtattttttgaatcaactactccaag |
41066003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 8496077 - 8496107
Alignment:
| Q |
49 |
tcaaactctacaccaacaaattgattgtaag |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8496077 |
tcaaactctacaccaacaaattgattgtaag |
8496107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 21482903 - 21482869
Alignment:
| Q |
49 |
tcaaactctacaccaacaaattgattgtaagcatt |
83 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21482903 |
tcaaactctacaccaacaaattgattgaaagcatt |
21482869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 21489244 - 21489190
Alignment:
| Q |
47 |
tatcaaactctacaccaacaaattgattgtaagcattgttatcatcaacaactcc |
101 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| || ||||||| ||||| |
|
|
| T |
21489244 |
tatcaaactcgacaccaacaaattgattgaaagcatttttcccatcaactactcc |
21489190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 21493055 - 21493021
Alignment:
| Q |
49 |
tcaaactctacaccaacaaattgattgtaagcatt |
83 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21493055 |
tcaaactctacaccaacaaattgattgaaagcatt |
21493021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University