View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_high_28 (Length: 252)
Name: NF18934_high_28
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 35639619 - 35639558
Alignment:
| Q |
11 |
agaatatatgggggctatgatcacataaagagagtttagcaatacaatgagttattttattt |
72 |
Q |
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| T |
35639619 |
agaatatatgggggctatgatcacataaagagaatttagcaatacaatgagttattttattt |
35639558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 35601553 - 35601629
Alignment:
| Q |
177 |
agctataaatttacaatcggtttcgaacaaa-cagcatgcattccgttccatatgaccactttgatatattcaagca |
252 |
Q |
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| T |
35601553 |
agctataaatttacaatcgttttcgaacaaaacagcatgtattctgttccatatgaccactttgatatattcaagca |
35601629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 35639461 - 35639385
Alignment:
| Q |
177 |
agctataaatttacaatcggtttcgaacaaa-cagcatgcattccgttccatatgaccactttgatatattcaagca |
252 |
Q |
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| T |
35639461 |
agctataaatttacaatcgttttcgaacaaaacagcatgtattctgttccatatgatcactttgatatattcaagca |
35639385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 35601498 - 35601531
Alignment:
| Q |
161 |
ataaggcaagagtattagctataaatttacaatc |
194 |
Q |
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| T |
35601498 |
ataaggcaagagtattagctataaatttacaatc |
35601531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 35639514 - 35639481
Alignment:
| Q |
161 |
ataaggcaagagtattagctataaatttacaatc |
194 |
Q |
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| T |
35639514 |
ataaggcaagagtattagctataaatttacaatc |
35639481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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