View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_high_34 (Length: 239)
Name: NF18934_high_34
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 52001745 - 52001528
Alignment:
| Q |
9 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
108 |
Q |
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| T |
52001745 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgtcgatgaatcccttact |
52001646 |
T |
|
| Q |
109 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001645 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
52001546 |
T |
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| Q |
209 |
gacttgcttcgcttgatg |
226 |
Q |
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|||||||||||||||||| |
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| T |
52001545 |
gacttgcttcgcttgatg |
52001528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 52011610 - 52011393
Alignment:
| Q |
9 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
108 |
Q |
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|||||||| ||||||||| ||||||||| ||||| ||||||||||||| ||||||||| | |||||||| |||| ||| ||||| | |||||| ||| | |
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| T |
52011610 |
tgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatt |
52011511 |
T |
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| Q |
109 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
208 |
Q |
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| T |
52011510 |
tgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatg |
52011411 |
T |
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| Q |
209 |
gacttgcttcgcttgatg |
226 |
Q |
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| T |
52011410 |
gaatggtttcgcttgatg |
52011393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 51987888 - 51988104
Alignment:
| Q |
9 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
108 |
Q |
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|||||||| ||||||||| ||||||||||||||| | ||||||||||||||| |||| | ||||||| |||| ||| ||||||||||||| |||| | |
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| T |
51987888 |
tgatgatggttctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatt |
51987987 |
T |
|
| Q |
109 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
208 |
Q |
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||| ||||||| | |||| |||||||| | | | |||| || ||||||||||| ||| |||| ||| ||||| |||||||| || |||| ||||| |
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| T |
51987988 |
tggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatg |
51988087 |
T |
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| Q |
209 |
gacttgcttcgcttgat |
225 |
Q |
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| T |
51988088 |
ccattgcttcgcttgat |
51988104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 11749419 - 11749218
Alignment:
| Q |
9 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
108 |
Q |
| |
|
|||||||| |||||||||||||||||| || || ||||||||||||||||||||||| | |||| ||| |||| ||||||||||||||||||||||| | |
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| T |
11749419 |
tgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttatt |
11749320 |
T |
|
| Q |
109 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
208 |
Q |
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|||||| | ||| |||||| |||||||| |||| |||| || |||||||||||| || |||| ||||| ||||| ||||| ||||||||||||| |
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| T |
11749319 |
tgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatcatgttgatg |
11749220 |
T |
|
| Q |
209 |
ga |
210 |
Q |
| |
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|| |
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| T |
11749219 |
ga |
11749218 |
T |
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