View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_high_6 (Length: 685)
Name: NF18934_high_6
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Original strand, 1906528 - 1906984
Alignment:
| Q |
10 |
agcagcacagacaagtcgaacaatcgcggttaagtactctggcttcccgacataaaattcaggcaaacaagacacaagtttctggtattcttcacctgct |
109 |
Q |
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| T |
1906528 |
agcatcacacacaagtcgaacaatcgcggttaagtactctggcttcccgacataaaattcaggcaaacaagacacaagtttctggtattcttcacctgct |
1906627 |
T |
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| Q |
110 |
tttgcaatctggaactgctctttcaattccaattcaatcagaaatcttacttgtttcttccttgttgttgtgcttgcaatcacttcaatgtactcgtgtg |
209 |
Q |
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| T |
1906628 |
tttgcaatctggaactgctctttcaattccaattcaatcagaaatcttacttgtttcttccttgttgttgtgcttgcaatcacttcaatgtattcgtgtg |
1906727 |
T |
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| Q |
210 |
aacctaaaatacaaaagcaacaacagaacataataattatgcattcatagtgtaaaatagtaattaattttagattaaaggatatgatacccaataaaaa |
309 |
Q |
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| T |
1906728 |
aacctaaaatacaaaagcaacaacagaacataataattatgcattcatagtgtaaaatagtaattaattttagattaaaggatatgatacccaataaaaa |
1906827 |
T |
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| Q |
310 |
ttcattattttgttacatcactctacttttattactacattttaaaaaatataacgcgtcaaaggaaaacgaacgtcttc------------tgtaaaac |
397 |
Q |
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| T |
1906828 |
ttcattattttgttacatcactctacttttattactacattttaaaaaatataacgcgtcaaaggaaaacaaacgtcttctagttatgtcattgtaaaac |
1906927 |
T |
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| Q |
398 |
taacttactcggacaatatatagacaaagatcctctacctttagggagggaaagtcg |
454 |
Q |
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| T |
1906928 |
taacttactcggacaatatatagacaaagatcctctaccttcagggagggaaagtcg |
1906984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 537 - 667
Target Start/End: Original strand, 1907067 - 1907197
Alignment:
| Q |
537 |
agcctaaagtcaccaaaaggtagagaatccaaatccgcaatatgtgtctaataaactctatcttgtatattggatctaattaaaccctttaatattagat |
636 |
Q |
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| T |
1907067 |
agcctaaagtcaccaaaaggtagagaatccaaatccgcaatatgtgtctaataaactctatcttgtatattggatctaattcaaccctttaatattagat |
1907166 |
T |
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| Q |
637 |
tgtaaaatgtggaatgtccaaactttataat |
667 |
Q |
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| T |
1907167 |
tgtaaaatgtggaatgtccaaactttataat |
1907197 |
T |
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