View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18934_high_7 (Length: 639)
Name: NF18934_high_7
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_7 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Original strand, 54219943 - 54220559
Alignment:
| Q |
18 |
gatagggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatataatgtcttcagatttgtgaagcaaataccatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54219943 |
gatagggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatataatgtcttcagatttgggaagcaaataccatca |
54220042 |
T |
|
| Q |
118 |
ggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaacttaaacctagaatctataaaattta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220043 |
ggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaacttaaacctagaatctataaaattta |
54220142 |
T |
|
| Q |
218 |
gggaaagtttaagatcaaggactttgtgcttcagtgcataagataacaaaatattaactttccatgcatcatatatatcaattccttgcaccttaatgca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54220143 |
gggaaagtttaagatcaaggactttgtgcttcagtgcataagataacaaaatattaactttccatgcatcatatatatcaattccttgcaccttaatgca |
54220242 |
T |
|
| Q |
318 |
gagcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaatctgctaacttcaaattttggtggtgtaacccatcacaaaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54220243 |
gagcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaatctgctaacttcaaattttggtggtgtaacccatcacaaaaa |
54220342 |
T |
|
| Q |
418 |
tgaggaatttgaaaatcaaagaagagtaagtgatcgagtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggact |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
54220343 |
tgaggaatttgaaaatcaaagaagagtaagtgatcgagtccacaagtgtttccactttttcactaatatggaggtttttacagcatctttggtagggact |
54220442 |
T |
|
| Q |
518 |
aaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatcattcatgttacccgcattatgtctttgcacatctgttgaagagattgcac |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54220443 |
aaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatcattcatgttacccgcattatgtctttgcacatctgttgaagagattgcac |
54220542 |
T |
|
| Q |
618 |
caaccatgatctgtgct |
634 |
Q |
| |
|
|||||||||||| |||| |
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| T |
54220543 |
caaccatgatctatgct |
54220559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 455 - 569
Target Start/End: Original strand, 31239859 - 31239973
Alignment:
| Q |
455 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
554 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||| ||| ||||||||||||| ||||||| || |||||||||| |||||||||| |||| ||||||| |
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|
| T |
31239859 |
gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaagt |
31239958 |
T |
|
| Q |
555 |
cactaatcatatcat |
569 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
31239959 |
tgctaatgatatcat |
31239973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 455 - 569
Target Start/End: Original strand, 31256356 - 31256470
Alignment:
| Q |
455 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
554 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||| ||| ||||||||||||| ||||||| || |||||||||| |||||||||| |||| ||||||| |
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|
| T |
31256356 |
gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaagt |
31256455 |
T |
|
| Q |
555 |
cactaatcatatcat |
569 |
Q |
| |
|
||||| ||||||| |
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|
| T |
31256456 |
tgctaatgatatcat |
31256470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 575
Target Start/End: Original strand, 31274780 - 31274887
Alignment:
| Q |
468 |
tccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatc |
567 |
Q |
| |
|
||||||| || ||||| | ||| ||| ||||| |||||| | |||| | |||||||||||||| ||||||||| |||||||||| |||||||| ||||| |
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|
| T |
31274780 |
tccacttctttgctaacacggaagttcttacaacatcttcgataggtagtaaagaaagaatatgaagaagaacaccctcaggtaaatcactaattatatc |
31274879 |
T |
|
| Q |
568 |
attcatgt |
575 |
Q |
| |
|
||||||| |
|
|
| T |
31274880 |
gttcatgt |
31274887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 455 - 567
Target Start/End: Complemental strand, 16130691 - 16130579
Alignment:
| Q |
455 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
554 |
Q |
| |
|
||||||||||| |||||||| || |||| |||||| ||| ||||| |||||||||| |||| |||||||||||||| |||||||||| |||||||||||| |
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|
| T |
16130691 |
gtccacaagtgcttccacttctttgctagtatggaagttcttacaacatctttggtcgggagtaaagaaagaatatgaagaagaacggcctcaggtaagt |
16130592 |
T |
|
| Q |
555 |
cactaatcatatc |
567 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16130591 |
cactaatcatatc |
16130579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 16130826 - 16130769
Alignment:
| Q |
319 |
agcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaat |
376 |
Q |
| |
|
|||||||||||| || |||||||||| | ||||||||||||||||| |||| ||||| |
|
|
| T |
16130826 |
agcctttctatgcgagtagatttgtgcataagtcttccaactagatctaagaggcaat |
16130769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 455 - 567
Target Start/End: Complemental strand, 17594101 - 17593989
Alignment:
| Q |
455 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
554 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| ||||| | |
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|
| T |
17594101 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt |
17594002 |
T |
|
| Q |
555 |
cactaatcatatc |
567 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17594001 |
cactaatcatatc |
17593989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 17594525 - 17594279
Alignment:
| Q |
21 |
agggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatataatgtcttcagatttgtgaagcaaataccatcaggt |
120 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||| ||||||| |||||||||| ||||||||||||| ||||||| || | ||| | |||||||||||| |
|
|
| T |
17594525 |
agggcacccagacaaaagccgttgagccgacttctcatttgcgaaggaaagatgtgaaagatataacgtcttcaagttagggaaacgtataccatcaggt |
17594426 |
T |
|
| Q |
121 |
ataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttaggg |
220 |
Q |
| |
|
||| | | | || ||| |||||||| |||||||||||||||| || || | ||||||||||| ||||||| |||||||| | | || | ||||| |
|
|
| T |
17594425 |
atatatagaatgaaaccaaattctaaacacaacttattcaatgattgggatgctgagaaattattgggtaacacaaacctagcaaatgtatggtctaggg |
17594326 |
T |
|
| Q |
221 |
aaagtttaagatcaaggactttgtgcttcagtgcataagataacaaa |
267 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||| ||||||||||| |
|
|
| T |
17594325 |
aaagtttaagatcaaggagtttgtgcatcaatgctgaagataacaaa |
17594279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 9891799 - 9891847
Alignment:
| Q |
479 |
gctaatatggaggtttttacagcatctttggtagggactaaagaaagaa |
527 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
9891799 |
gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa |
9891847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 455 - 567
Target Start/End: Original strand, 14729386 - 14729498
Alignment:
| Q |
455 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
554 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| ||||| | |
|
|
| T |
14729386 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt |
14729485 |
T |
|
| Q |
555 |
cactaatcatatc |
567 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
14729486 |
cacttatcatatc |
14729498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 14728962 - 14729208
Alignment:
| Q |
21 |
agggcacccagagagaagtcgttgggccgacatctcattattgaaggaaagacgtgaaagatataatgtcttcagatttgtgaagcaaataccatcaggt |
120 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||| ||||||| | |||||||||| ||||||||||||| ||||||| || | ||| | |||||||||||| |
|
|
| T |
14728962 |
agggcacccagacaaaagccgttgagccgacttctcattttcgaaggaaagatgtgaaagatataacgtcttcaagttagggaaacgtataccatcaggt |
14729061 |
T |
|
| Q |
121 |
ataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttaggg |
220 |
Q |
| |
|
||| | | | || ||| ||||||| |||||||||||||||| || || | ||||||||||| ||||||| |||||||| | | | | ||||| |
|
|
| T |
14729062 |
atatatagagtgaaaccaaattctaagcacaacttattcaatgattgggatgctgagaaattattgggtaacacaaacctagcaaatgtttggtctaggg |
14729161 |
T |
|
| Q |
221 |
aaagtttaagatcaaggactttgtgcttcagtgcataagataacaaa |
267 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||| ||||||||||| |
|
|
| T |
14729162 |
aaagtttaagatcaaggagtttgtgcatcaatgctgaagataacaaa |
14729208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 527
Target Start/End: Complemental strand, 1095107 - 1095059
Alignment:
| Q |
479 |
gctaatatggaggtttttacagcatctttggtagggactaaagaaagaa |
527 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
1095107 |
gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa |
1095059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 14740784 - 14740826
Alignment:
| Q |
312 |
aatgcagagcctttctatgtgattagatttgtgaagtagtctt |
354 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
14740784 |
aatgcaaagcctttctatgtgattggatttgtgtagtagtctt |
14740826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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