View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18934_high_8 (Length: 512)
Name: NF18934_high_8
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 38841450 - 38840955
Alignment:
| Q |
1 |
acttccctatatataatcctcaactaagataatataaaaacaactcaagctctaataaactaactcatcaattacttccttaagaaaaaacatgtatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38841450 |
acttccctatatataatcctcaactaagataacataaaaacaactcaagctctaataaactaactcatcaattacttcctcaagaaaaaacatgtatgct |
38841351 |
T |
|
| Q |
101 |
tctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaatcactaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38841350 |
tctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacataagaaggttactcattcaaaacccagttgatcatcaatcactaacca |
38841251 |
T |
|
| Q |
201 |
actcccctactttaacaaacaaccataattcaacagactcaaattttggagctcgtgaatttgattcaaaagttgtgatgatacttgcagtcatattgtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38841250 |
actcccctactttaacaaacaaccataattcaacagactcaaattttggagatcgtgaatttgattcaaaagttgtgatgatacttgcagtcatattatg |
38841151 |
T |
|
| Q |
301 |
tgtttttatttgctcacttgcattaaactccattatcaggtgtgccttaaggttttcaaacgtagtcatcatcaacgactcttctagttcgaacagcaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
38841150 |
tgtttttatttgctcacttgcattaaactccattatcaggtgtgccttaaggttttcaaacgtagccatcaacaacgactcttctagttcgaacagcaat |
38841051 |
T |
|
| Q |
401 |
tcttcgcctcaatcggtcaataaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttg |
496 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38841050 |
tcttcgcttcaatcggtcaataaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttg |
38840955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 87 - 496
Target Start/End: Complemental strand, 38859099 - 38858693
Alignment:
| Q |
87 |
aaaacatgtatgcttctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatca |
186 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38859099 |
aaaacatgtatgcttctacttcttttacttcaccacttctacatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatca |
38859000 |
T |
|
| Q |
187 |
tcaatcact---aaccaactcccctactttaacaaacaaccataattcaacagactcaaattttggagctcgtgaatttgattcaaaagttgtgatgata |
283 |
Q |
| |
|
||||||||| || |||| ||||| ||| || |||||| | |||||||| |||||||| || ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
38858999 |
tcaatcacttaaaatcaacccccctgttttcacgaacaacaacaattcaaccgactcaaagttcggagctcgtgaatttgattcagatgttgtgatgata |
38858900 |
T |
|
| Q |
284 |
cttgcagtcatattgtgtgtttttatttgctcacttgcattaaactccattatcaggtgtgccttaaggttttcaaacgtagtcatcatcaacgactctt |
383 |
Q |
| |
|
||||||| |||| |||| ||||||||| | ||||| |||||||||||| || |||||| ||||||| ||||||| || || | |||| |
|
|
| T |
38858899 |
attgcagttctattatgtgcttttatttgtttacttgtattaaactccatcataaggtgtttcttaaggatttcaaa------caacaatgaatcttctt |
38858806 |
T |
|
| Q |
384 |
ctagttcgaacagcaattcttcgcctcaatcggtcaataaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaa |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38858805 |
ctagttcgaacagcaattcttcgcctcaatcggtcaataaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaa |
38858706 |
T |
|
| Q |
484 |
actaccaagtttg |
496 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38858705 |
actaccaagtttg |
38858693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 38865502 - 38865132
Alignment:
| Q |
1 |
acttccctatatataatcctcaactaagataatataaaaacaactcaagctctaataaactaactcatcaattacttccttaagaaaaaaca-tgtatgc |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||| || ||||| ||||| || |||| || |||||||| ||||||| |
|
|
| T |
38865502 |
acttccctatatataatcctcatctaagataacataccaacaactcaatctctaattaaataact-atcaactagttccccaacaaaaaacaatgtatgc |
38865404 |
T |
|
| Q |
100 |
t---tctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaatcacta |
196 |
Q |
| |
|
| |||| |||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| |
|
|
| T |
38865403 |
tgcttctacttcctttacttcacaactcgtccatgagcttcttgtggaatctcacacaagaaggttactctttcaagacccaattgaacatcaatcacta |
38865304 |
T |
|
| Q |
197 |
accaactcccctactttaacaaacaa---ccataattcaacagactcaaattttggagctcgtgaatttgattcaaaagttgtgatgatacttgcagtca |
293 |
Q |
| |
|
|| ||||||| | ||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||| ||| | |||||||||||||| |
|
|
| T |
38865303 |
actaactcccatgttttaacaaataataaccataattcaacagactcatattttggagctcgtgaattcgattcaaatgttataatgatacttgcagttt |
38865204 |
T |
|
| Q |
294 |
tattgtgtgtttttatttgctcacttgcattaaactccattatcaggtgtgccttaaggttttcaaacgtag |
365 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||| |
|
|
| T |
38865203 |
tattgtgtgctcttatttgctcacttgcattaaactccatcataaggtgtggtttaaggttttctaacgtag |
38865132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 28 - 496
Target Start/End: Complemental strand, 38827638 - 38827167
Alignment:
| Q |
28 |
gataatataaaaacaac--tcaagctctaataaactaactcatcaattacttccttaagaaaaaaca-tgtatgcttctatttcctttactacacaaata |
124 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||| ||||| | ||| || | |||||| |||||||||||| ||| |||||| ||||| | |
|
|
| T |
38827638 |
gataatataacaacaaccctcaagctctaattaactaacttatcaaat---tccccaacagaaaacaatgtatgcttctacttcttttacttcacaactc |
38827542 |
T |
|
| Q |
125 |
ttcaatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaatcactaaccaactcccctactttaacaaacaacc |
224 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||||||||||||| | ||||| ||| ||||| ||||||||| ||||| ||||||| | | ||| |||||| |
|
|
| T |
38827541 |
ctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccctgttctcacacacaacc |
38827442 |
T |
|
| Q |
225 |
ataattcaacagactcaaattttggagctcgtgaatttgattcaaaagttgtgatgatacttgcagtcatattgtgtgtttttatttgctcacttgcatt |
324 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||| | |||||||||||||||| || |
|
|
| T |
38827441 |
ataattcaactaactcatattttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgcctt |
38827342 |
T |
|
| Q |
325 |
aaactccattatcaggtgtgccttaaggttttcaaacgtagtcatcatcaacgactcttct---agttcgaacagcaattcttcgcctcaatcggtcaat |
421 |
Q |
| |
|
|||||| || || ||||| |||||||||||||| ||||||| | | | ||||| ||||||| ||||||| |||||| || || ||||||| || || |
|
|
| T |
38827341 |
aaactcgatcataaggtgcgccttaaggttttctaacgtagccctaaacaacggctcttcttcgagttcgagcagcaactcctcacctcaattggctaac |
38827242 |
T |
|
| Q |
422 |
aaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttg |
496 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| ||||| || || |||||||| || |||||||||| |||| |
|
|
| T |
38827241 |
aaaggaatcaagaagaaagctctcaagacatttccaacagtaagttattcaactgagttaaaactaccaactttg |
38827167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 38862067 - 38861567
Alignment:
| Q |
1 |
acttccctatatataatcctcaactaagata--atataaaaacaactcaagctctaataaactaactcatcaattacttccttaagaaaaaaca-tgtat |
97 |
Q |
| |
|
||||||||||||||| ||| |||||||||| | |||| | |||||||||||||||| ||||||||||| || | ||| || |||||||| ||||| |
|
|
| T |
38862067 |
acttccctatatatacccct-aactaagatacaacataacagcaactcaagctctaattaactaactcataaaat---tccccaacaaaaaacaatgtat |
38861972 |
T |
|
| Q |
98 |
gcttctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaatcact-- |
195 |
Q |
| |
|
||||||| |||||||||| ||| | | || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38861971 |
gcttctacttcctttacttcaccacttctccatgaacttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaatcactta |
38861872 |
T |
|
| Q |
196 |
-aaccaactcccctactttaacaaacaaccataattcaacagactcaaattttggagctcgtgaatttgattcaaaagttgtgatgatacttgcagtcat |
294 |
Q |
| |
|
|| |||||||| || ||| ||||| | ||| |||||||| |||||| ||||| |||||| ||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
38861871 |
aaatcaactcccgtattttcacaaatagccacaattcaaccgactcatattttagagctcctgaatttgattcaaatgttgtgatgatacttgcagttgt |
38861772 |
T |
|
| Q |
295 |
attgtgtgtttttatttgctcacttgcattaaactccattatcaggtgtgccttaaggttttcaaacgtagtcatcatcaacgactcttct---agttcg |
391 |
Q |
| |
|
||| |||| ||||||| | | ||||||||||||| || || ||| ||||||||| |||| ||| |||| | ||| ||||||||||||| ||||| |
|
|
| T |
38861771 |
attatgtgcttttattggtccccttgcattaaactttatcataaggcgtgccttaatatttttaaatgtagccctcaacaacgactcttcttcgagttca |
38861672 |
T |
|
| Q |
392 |
aacagcaattcttcgcctcaatcggtcaataaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaa |
491 |
Q |
| |
|
| || ||| ||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||| ||| ||||||| || || || ||||| ||||||| |
|
|
| T |
38861671 |
agcaacaacaattcacctcaattggtcaacaaaggaatcaagaagaaagctctcaagaaatttcctacaatgagctattccaccgagttgaatctaccaa |
38861572 |
T |
|
| Q |
492 |
gtttg |
496 |
Q |
| |
|
||||| |
|
|
| T |
38861571 |
gtttg |
38861567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 92 - 365
Target Start/End: Original strand, 38850569 - 38850842
Alignment:
| Q |
92 |
atgtatgcttctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaat |
191 |
Q |
| |
|
|||||| |||||| |||||| ||| ||||| | || ||||||||||||| ||||| |||||||||||||||||| | ||||| ||| ||||| ||||| |
|
|
| T |
38850569 |
atgtatacttctacttccttaacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattttcaat |
38850668 |
T |
|
| Q |
192 |
cactaaccaactcccctactttaacaaacaaccataattcaacagactcaaattttggagctcgtgaatttgattcaaaagttgtgatgatacttgcagt |
291 |
Q |
| |
|
||| ||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
38850669 |
caccaaccagctcccctgtgttaacaaacaatcacaattcaacagactcaaattttggagctcgtgaatttgattcaaatgttgtgatgatagttgcagt |
38850768 |
T |
|
| Q |
292 |
catattgtgtgtttttatttgctcacttgcattaaactccattatcaggtgtgccttaaggttttcaaacgtag |
365 |
Q |
| |
|
| |||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
38850769 |
cctattatgtgcttttatttgctcacttgcattaaactccatcataaggtgtgccttaagggtttcaaacgtag |
38850842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 243 - 496
Target Start/End: Complemental strand, 38847022 - 38846775
Alignment:
| Q |
243 |
attttggagctcgtgaatttgattcaaaagttgtgatgatacttgcagtcatattgtgtgtttttatttgctcacttgcattaaactccattatcaggtg |
342 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||| || | ||| ||||||||| | ||||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
38847022 |
attttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactccattgtaaggtg |
38846923 |
T |
|
| Q |
343 |
tgccttaaggttttcaaacgtagtcatcatcaacgactcttct---agttcgaacagcaattcttcgcctcaatcggtcaataaaggaatcaagaagaaa |
439 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||||| ||||| | || ||| ||||| ||||||| | ||| |||||||||||||||||| |
|
|
| T |
38846922 |
tgccct---------aaacgtagccatcatcaacgactcttctttgagttctagcatcaactcttcacctcaatttgccaacaaaggaatcaagaagaaa |
38846832 |
T |
|
| Q |
440 |
gctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttg |
496 |
Q |
| |
|
||||| ||| |||| || ||||| || || |||||||| ||||||||||||| |||| |
|
|
| T |
38846831 |
gctctcaagacattcccaacagtaagttattcaactgagttgaaactaccaactttg |
38846775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 38847198 - 38847053
Alignment:
| Q |
44 |
ctcaagctctaataaactaactcatcaattacttccttaagaaaaaaca-tgtatgcttctatttcctttactacacaaatattcaatgagcttcttgtg |
142 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||| || | |||||| |||||||||||| ||| |||||| ||||| | || ||||||||||||| |
|
|
| T |
38847198 |
ctcaagctctaattaactaactcatcaaat---tccccaacagaaaacaatgtatgcttctacttcttttacttcacaactcctccatgagcttcttgta |
38847102 |
T |
|
| Q |
143 |
gaatctcacacaagaaggttactcattcaaaacccagttgatcatcaat |
191 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
38847101 |
gaatcacacacaagaaggttactcttccaaaacccagttgatcatcaat |
38847053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 38865096 - 38865022
Alignment:
| Q |
422 |
aaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttg |
496 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||||||||||| ||| |||| |||||||| ||||||||| |
|
|
| T |
38865096 |
aaaggaatcaagaagaaagctctcaaaacattccccacagtgagctattcagctgagttgaaacttccaagtttg |
38865022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 496
Target Start/End: Original strand, 38850860 - 38850949
Alignment:
| Q |
407 |
cctcaatcggtcaataaaggaatcaagaagaaagctcttaaggcatttcccacagtgagctactcaactgacttgaaactaccaagtttg |
496 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| ||| |||||| ||| ||||||| || || || ||||| |||||||||||| |
|
|
| T |
38850860 |
cctcaattggtcaacaaaggaatcaagaagaaagctctcaagaaatttcctacaatgagctattccaccgagttgaatctaccaagtttg |
38850949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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