View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_1 (Length: 1021)
Name: NF18934_low_1
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 284 - 663
Target Start/End: Original strand, 52002002 - 52002381
Alignment:
| Q |
284 |
tgagtggtttctttccttttggatcggaagtgttttcaaagttgtagagttttgtgcgtttagaagaagaggcatcatcggagtcgggttcagttcctct |
383 |
Q |
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| T |
52002002 |
tgagtggtttctttccttttggatcagaagtgttttcaaagttgtagagttttgtgcgtttagaagaagaggcatcatcggagtcgggttccgttcctct |
52002101 |
T |
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| Q |
384 |
cttgagaaagggttcatgtggtctttcatctctatgaatatgattgggagattcaggaacatatgttgatggggataaggtaaggattgcaccaatttct |
483 |
Q |
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| T |
52002102 |
cttgagaaagggttcatgtggtctttcatctctatgaatatgattgggagattcaggaacatatgttgatggggctaaggtaaggattgcaccaatttct |
52002201 |
T |
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| Q |
484 |
ttgttggaaaaaccgtggccctttagttgttctgtgatagaagttatatcctcaatgggaggggcatcgttgggattgggtgggtccattttctgtttct |
583 |
Q |
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| T |
52002202 |
ttgttggaaaaaccgtggccctttagttgttctgtgatagaagttatatcctcaatgggagggacatcgttgggattgggtgggtccattttctgtttct |
52002301 |
T |
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| Q |
584 |
tattcttgttttcccgcgctaaattggttgatcaaaatctactacaatgtgttaaaatatttaattagtttgatggatgc |
663 |
Q |
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| T |
52002302 |
tattcttgttttcccgcgctaaattggttgatcaaaatctactacaatgtgttaaaatatttaattagtttgatggatgc |
52002381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 698 - 1005
Target Start/End: Original strand, 52002405 - 52002712
Alignment:
| Q |
698 |
ccaactatttattatgacattgaacgacaaaatcgaacatatgaccttgctatctatcatatggttcaaaagacatgaggctcatgagtgattctctcat |
797 |
Q |
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| T |
52002405 |
ccaactatttattatgacattgaacaacaaaatcgtacatatgaccttactatctatcatatggttcaaaagacatgaggctcatgagtgattctctcat |
52002504 |
T |
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| Q |
798 |
cttctatgtgaagagtatgacttacagttaatttatgtagttcaattaactacagttttgtttgtaattcaaattaaccagattttttaacgtgtgatta |
897 |
Q |
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| T |
52002505 |
cttctatgtaaagagtacgacttactgttaatttatgtagttcaattaactacagttttgtttgtaaatcaaattaaccagattttttaacgtgtgatta |
52002604 |
T |
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| Q |
898 |
gttagttgtgtgatggtgtataaaaagtgagtgttcatctatcattttgaaagttggaattaacaccttcattttgaaatttgtaatttaaaacgataag |
997 |
Q |
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| T |
52002605 |
gttagttgtgtgaaggtgtataaaaagtgagtgttcatctatcattttgaaagttggaattaacaccttcattttgaaatttgtaatttaaaacgataag |
52002704 |
T |
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| Q |
998 |
gtcaattt |
1005 |
Q |
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| T |
52002705 |
gtcaattt |
52002712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 52001758 - 52002003
Alignment:
| Q |
7 |
acatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataa |
106 |
Q |
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| T |
52001758 |
acatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataa |
52001857 |
T |
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| Q |
107 |
atgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaagg |
206 |
Q |
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| T |
52001858 |
atgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaagg |
52001957 |
T |
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| Q |
207 |
tatttgattttctggtatttccttcctctgatgatgatcatcaatg |
252 |
Q |
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| T |
52001958 |
tagttgattttctggtatttccttcctctgatgatgatcatcaatg |
52002003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 52011785 - 52011878
Alignment:
| Q |
145 |
tcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctgat |
238 |
Q |
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| T |
52011785 |
tcgctatcattagtttcagtttcattggtaatgatatagtcattaatatccaaatccagtgatatttgattttctgttatttccttcctctgat |
52011878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 525
Target Start/End: Original strand, 52012165 - 52012216
Alignment:
| Q |
474 |
accaatttctttgttggaaaaaccgtggccctttagttgttctgtgatagaa |
525 |
Q |
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| T |
52012165 |
accaatttctttgtcggaaaaaccgtgacccttgagttgttttgtgacagaa |
52012216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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