View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_16 (Length: 353)
Name: NF18934_low_16
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 2467114 - 2466773
Alignment:
| Q |
1 |
aagattgctttatctcgtaattttattggtcgccaatctattaactatctctgcaggaactgtggccttcttcaagacgtcaaagtcattaagttttctc |
100 |
Q |
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| T |
2467114 |
aagattgctttatctcgtaattttattggttgccaatctattaactatctctgcaggaactgtggccttcttcaagacgtcaaagtcattaagttttctc |
2467015 |
T |
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| Q |
101 |
cacgatatcggatgacagtaattggtcgttgtctttcatgaaatctgccaccactgtgagcttcttcaagatgtcatcataattattatgatataaatgt |
200 |
Q |
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| T |
2467014 |
cacgatatcagatgacagtaattggtcgttgtctttcatgaaatctgccaccactgtgagcttcttcaagatgtcatcataattattatgatataaatgt |
2466915 |
T |
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| Q |
201 |
ataattaaattagaactttattctcaatttggttgtttctgcaaagaaaacttatgtatcgagttagacataattatttaaccaactttcagttctttct |
300 |
Q |
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| T |
2466914 |
ataattaaattagaactttattctcaatttggttgtttctgcaaagaaaacttatgtatcgagttagacataattatttaaccaactttcagttctttct |
2466815 |
T |
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| Q |
301 |
tttacttgctgcaatattttgttttgtatatgccccattctt |
342 |
Q |
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| T |
2466814 |
tttacttgctgcaatattttgttttgtatatgccccattctt |
2466773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 5103016 - 5103136
Alignment:
| Q |
208 |
aattagaactttattctcaatttggttgtttctgcaaagaaaacttatgtatcgagttagacataattatttaaccaactttcagttctttcttttactt |
307 |
Q |
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| T |
5103016 |
aattagaattttattctcaatttagctgttaccgcaaggcaaacttatatattgagttagacataactatttatccaaatttcagtt-tttattttactt |
5103114 |
T |
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| Q |
308 |
gctgcaatattttgttttgtat |
329 |
Q |
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|||||||| ||||||||||||| |
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| T |
5103115 |
gctgcaatgttttgttttgtat |
5103136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5102535 - 5102624
Alignment:
| Q |
1 |
aagattgctttatctcgtaattttattggtcgccaatctattaactatctctgcaggaactgtggccttcttcaagacgtcaaagtcatt |
90 |
Q |
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| T |
5102535 |
aagattgttttatctcgtaatttcataggtacccaatctattaaccatctttgcaggaactgtgaccttcttcaagatgtcaaagtcatt |
5102624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 5107092 - 5107169
Alignment:
| Q |
252 |
ttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtat |
329 |
Q |
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| T |
5107092 |
ttatatattgagttagacatatttatttatccagctttcagttctttcttttactttctgcaatgttttgttttgtat |
5107169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2477167 - 2477078
Alignment:
| Q |
1 |
aagattgctttatctcgtaattttattggtcgccaatctattaactatctctgcaggaactgtggccttcttcaagacgtcaaagtcatt |
90 |
Q |
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|||||||||||||||| |||||| || ||||| | ||||||| |||||||||||| |||||| | |||||||||||| || | ||||||| |
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| T |
2477167 |
aagattgctttatctcctaatttcatgggtcgacgatctattgactatctctgcaagaactgcgaccttcttcaagaagtaacagtcatt |
2477078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 2485655 - 2485583
Alignment:
| Q |
255 |
tgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
328 |
Q |
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| T |
2485655 |
tgtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 2462854 - 2462783
Alignment:
| Q |
256 |
gtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
328 |
Q |
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|||| |||||||||||||| ||||| |||||| ||||| || |||||||| |||||||| |||| ||||||| |
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| T |
2462854 |
gtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2462783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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