View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18934_low_17 (Length: 347)
Name: NF18934_low_17
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 31 - 269
Target Start/End: Complemental strand, 7903056 - 7902820
Alignment:
| Q |
31 |
tttggtaaccaagtctgatcaaagtttttgaaatgataagtacaaagtggacaccagtatcaacataagtaaagtcatgcaaatcagaactcaagacata |
130 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7903056 |
tttggtaaccaagtctgatcaaagtttc-gaaatgacaagtacaaagtgcacgccagtattaacataagtaaagtcatgcaaatcagaactca-gacata |
7902959 |
T |
|
| Q |
131 |
tgaccattatcctgtactcaaataatagaaaactttggtatttctgtgggagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902958 |
tgaccattatcctgtactcaaataatagaaaactttggtatttctgtgggagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttc |
7902859 |
T |
|
| Q |
231 |
cataaagcttcatttgtttgcacctcctgagggctgcta |
269 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
7902858 |
cataaagcttcatttggttgcacctcctgagggcagcta |
7902820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 7913366 - 7913210
Alignment:
| Q |
145 |
tactcaaataatagaaaactttggtatttctgtgg-----gagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagct |
239 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7913366 |
tactcaaataatagaaaacttgggtatttttgtaggagcagagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagct |
7913267 |
T |
|
| Q |
240 |
tcatttgtttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
296 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7913266 |
tcatttggttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
7913210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 7913498 - 7913384
Alignment:
| Q |
35 |
gtaaccaagtctgatcaaagtttttgaaatgataagtacaaagtggacaccagtatcaacataagtaaagtcatgcaaatcagaactcaagacatatgac |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7913498 |
gtaaccaagtctgatcaaagtttc-gaaatgacaagtacaaagtgcacaccagtattaacataagtaaagtcatgcaaatcagaactc-ggacatatgat |
7913401 |
T |
|
| Q |
135 |
cattatcctgtactcaa |
151 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
7913400 |
cattatcctgtattcaa |
7913384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 7896435 - 7896323
Alignment:
| Q |
181 |
agcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttgtttgcacctcctgagggctgctagagcatcagac |
280 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||| |||| || |||| ||| |||||| |
|
|
| T |
7896435 |
agcaggagtaaccaaacttgttccaacaagctcaatttgcaatgtctttccatcaagcttcatattgttgtacctcttgagagcggctaaagcctcagac |
7896336 |
T |
|
| Q |
281 |
tccctagtaaaga |
293 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
7896335 |
tgccttgtaaaga |
7896323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University