View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18934_low_19 (Length: 290)

Name: NF18934_low_19
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18934_low_19
NF18934_low_19
[»] chr3 (1 HSPs)
chr3 (1-290)||(52113689-52113980)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 52113980 - 52113689
Alignment:
Q  1 ttaattcaccggctatggatctggacggcgcatattttacacacttagctttgatttcccaatacaagtcttcaatttcaacttgctatgttaatctcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52113980 ttaattcaccggctatggatctggacggcgcatattttacacacttagttttgatttcccaatacaagtcttcaatttcaacttgctatgttaatctcac 52113881  T
Q  101 gttgattatccataaatacaagtttcaaagtccactacaatcacttctcatttctcaattatccccttcccacaaattgtaacattttc--ccccgttca 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  52113880 gttgattatccataaatacaagtttcaaagtccactacaatcacttctcatttctcaattatccccttcccacaaattgtaacattttcccccccgttca 52113781  T
Q  199 cttccttcatttcattttgtgtgtctaatctaaagtctgatcctaattagttccaaacctaaaaatggcatcatcatcacttacctcctcaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52113780 cttccttcatttcattttgtgtgtctaatctaaagtctgatcctaattagttccaaacctaaaaatggcatcatcatcacttacctcctcaa 52113689  T

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