View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18934_low_2 (Length: 858)
Name: NF18934_low_2
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_2 |
 | |
|
| [»] scaffold0202 (2 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-142; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 521 - 845
Target Start/End: Original strand, 31042941 - 31043265
Alignment:
| Q |
521 |
tgtatctaaaacagcatcatcctcattctcacagacatgagaggtgaattggtgttgaatttcgtcgcagacatcttgttctaaggtctaaagaataaca |
620 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31042941 |
tgtatctaaaacagcatcatcctgattctcacagccatgagaggtgaattggtgtataatttcttcgcagacatcttgttctaaggtctaaagaataaca |
31043040 |
T |
|
| Q |
621 |
tatacaaactttaggtcttttttgatataaaaagccatgacttaagctaataggataaagaaaaggttatagtttctctactcaatgagcaagcaggagt |
720 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31043041 |
tatacaaactttgggtctattttgatatgaaaagccatgacttaagctaataggataacgaaaaggttatagtttctctactgaatgagcaagcaggagt |
31043140 |
T |
|
| Q |
721 |
aataagtaacacccactttgaggagtcaaaatcttctccatttattagtctctccactttgagtcccacaccaataaaatgttaaacatcacataccaag |
820 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31043141 |
aataagtaacacccactttgagaagtcaagatcctctccatttattagcttctccactttgagtcccacaccaataaaatgttaaacatcacataccaag |
31043240 |
T |
|
| Q |
821 |
tttacctataagaaaatattcgtct |
845 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
31043241 |
tttacctataaacaaatattcgtct |
31043265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 138 - 490
Target Start/End: Original strand, 31042595 - 31042951
Alignment:
| Q |
138 |
tttactcta-tggtgctgactacttgtagttctcgattatcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggtcttt |
236 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31042595 |
tttactctaatggtgctgactacttgtagttctcaattgtcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggtcttt |
31042694 |
T |
|
| Q |
237 |
gatatttgttgaatagattaagaggatcatcggcttttgcaacatagtttgtcgccgcctccaccttgcacgcacaacacataggccgttgatatccctt |
336 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31042695 |
gatatttgtgaaatagattaagaggatcatcggcttttgcgacatagttcgtcgacgcctccaccttgcacgcacaacacataggccgttgatatccttt |
31042794 |
T |
|
| Q |
337 |
gaagtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccaccgtctctctatttgtgcaagttacagaag |
436 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| ||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31042795 |
gaagttgctgcatctggcttctatagcgttcgtaaccttgtagtcgttgcatcctcttcctcgcacgccaccgtctctctatttgtgcaagttacagaag |
31042894 |
T |
|
| Q |
437 |
---ttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaa |
490 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
31042895 |
taattaaagacttggaccatataatatgatcatgataaatacatactgtatctaaaa |
31042951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 325 - 597
Target Start/End: Original strand, 31106339 - 31106611
Alignment:
| Q |
325 |
ttgatatcccttgaagtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccaccgtctctctatttgtgc |
424 |
Q |
| |
|
|||||||||||||||||| |||| || || |||| ||||||| |||| ||||| ||||| ||| | |||||| || ||||||||||||||||||||| |
|
|
| T |
31106339 |
ttgatatcccttgaagtcactgcttcgggatgctcctgcgttcataaccttgtcatcgttgcattcgcttccttgaacaccaccgtctctctatttgtgc |
31106438 |
T |
|
| Q |
425 |
aagttacagaagttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgta |
524 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
31106439 |
aagtcacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgca |
31106538 |
T |
|
| Q |
525 |
tctaaaacagcatcatcctcattctcacagacatgagaggtgaattggtgttgaatttcgtcgcagacatctt |
597 |
Q |
| |
|
||||||| || |||||| ||| | ||||| |||| ||||||| | |||||||||| ||| || ||||| |||| |
|
|
| T |
31106539 |
tctaaaaaagtatcatcgtcactgtcacatacataagaggtgcactggtgttgaaattcctctcagacgtctt |
31106611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 31107925 - 31108032
Alignment:
| Q |
176 |
tcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggtctttgatatttgttgaatagattaagaggatcatcggcttttg |
275 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
31107925 |
tcttatttattctcttcaactatatgagtggtgatagtttcatgatttctgctaggtctttgatgtttgttgaatacattaagagaatcatcggcttttg |
31108024 |
T |
|
| Q |
276 |
caacatag |
283 |
Q |
| |
|
|||||||| |
|
|
| T |
31108025 |
caacatag |
31108032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 31106207 - 31106345
Alignment:
| Q |
108 |
ataatgttgatattgaatggttcaaaataatttactcta-tggtgctgactact----tgtagttctcgattatcttatttattctattcaactatatga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| || || |||||||||| ||| ||||||||||||| |
|
|
| T |
31106207 |
ataatgttgatattgaatggttcaaaataatttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtctcttcaactatatga |
31106306 |
T |
|
| Q |
203 |
gtggtgatagtttcactatttctgctaggtctttgatat |
241 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31106307 |
gtgctgatagtttcagtatttctgctaggtctttgatat |
31106345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 410 - 549
Target Start/End: Complemental strand, 31094907 - 31094768
Alignment:
| Q |
410 |
tctctctatttgtgcaagttacagaagttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgac |
509 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||| ||| |
|
|
| T |
31094907 |
tctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgac |
31094808 |
T |
|
| Q |
510 |
agtgtttcacgtgtatctaaaacagcatcatcctcattct |
549 |
Q |
| |
|
||| |||| ||| |||||||| || |||||| ||||||| |
|
|
| T |
31094807 |
ggtgcttcatgtgcatctaaaaaagtatcatcatcattct |
31094768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 317 - 555
Target Start/End: Original strand, 31050321 - 31050554
Alignment:
| Q |
317 |
ataggccgttgatatcccttgaagtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccaccgtctctct |
416 |
Q |
| |
|
||||| |||| ||||||| || |||||||| ||| ||||||||||| |||||||| ||||||| | ||||||| ||| ||| | || ||||||| |
|
|
| T |
31050321 |
atagggcgttaatatcccatgcggtcgctgcttctagctgctactgcatttgtaaccccgtcgtcgctgcatcctccaactcgtacgacgccatctctct |
31050420 |
T |
|
| Q |
417 |
atttgtgcaagttacagaagttaaagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgacagtgttt |
516 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||| |||||| | | |||||||| ||||||||||||| ||||||||| |||||| || |
|
|
| T |
31050421 |
atttgtgctagttactcaagttgaagacttggaccatatagtatgatcatagttaatacataatgtatttaaaatggttttgttaa-----acagtgctt |
31050515 |
T |
|
| Q |
517 |
cacgtgtatctaaaacagcatcatcctcattctcacaga |
555 |
Q |
| |
|
|| ||| |||||||| | ||||||| ||||||| ||||| |
|
|
| T |
31050516 |
catgtgcatctaaaaaaacatcatcgtcattctaacaga |
31050554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 608 - 665
Target Start/End: Original strand, 31108510 - 31108567
Alignment:
| Q |
608 |
ctaaagaataacatatacaaactttaggtcttttttgatataaaaagccatgacttaa |
665 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
31108510 |
ctaaagaataatatatacaaactttgggtctattttgatataaaaagccatgacttaa |
31108567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 31095134 - 31095074
Alignment:
| Q |
191 |
tcaactatatgagtggtgatagtttcactatttctgctaggtctttgatatttgttgaata |
251 |
Q |
| |
|
|||||||||| |||||||| |||| | ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
31095134 |
tcaactatatcagtggtgacagttcctctattcctgctaggtctttgatgtttgttgaata |
31095074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 550
Target Start/End: Complemental strand, 21181631 - 21181561
Alignment:
| Q |
480 |
tgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatcatcctcattctc |
550 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||||| | | |||||||| ||||||||| | |||||| |
|
|
| T |
21181631 |
tgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatcattattctc |
21181561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 538
Target Start/End: Complemental strand, 21150347 - 21150280
Alignment:
| Q |
471 |
aatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatc |
538 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||||||||||| ||||||||| ||| |||||| | |||||| |
|
|
| T |
21150347 |
aatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaagcatc |
21150280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 340 - 555
Target Start/End: Complemental strand, 3693 - 3478
Alignment:
| Q |
340 |
gtcgctgcatctggctgctactgcgtttgtaactttgtcgtcgtttcatcctcttcctcacacgccaccgtctctctatttgtgcaagttacagaagtta |
439 |
Q |
| |
|
|||||||| |||||||||||| || |||||||| ||||||| | |||||||||||||| ||| |||| |||||| |||||||| |||||| |||||| |
|
|
| T |
3693 |
gtcgctgcttctggctgctaccgcatttgtaaccccgtcgtcgctgcatcctcttcctcatacgacaccatctctccatttgtgctagttactgaagttg |
3594 |
T |
|
| Q |
440 |
aagacttggaccatataatatgatgctgataaatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatca |
539 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||| ||||||||||||| |||||||||||||| ||||| |||| ||| ||||||| || |||| |
|
|
| T |
3593 |
aagacttggaccttataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgtggcagtgcttcatgtgcttctaaaaaagtatca |
3494 |
T |
|
| Q |
540 |
tcctcattctcacaga |
555 |
Q |
| |
|
|| ||||||| ||||| |
|
|
| T |
3493 |
tcgtcattctaacaga |
3478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 697
Target Start/End: Complemental strand, 3431 - 3374
Alignment:
| Q |
641 |
tttgatataaaaagccatgacttaagctaataggataaagaaaagg-ttatagtttct |
697 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
3431 |
tttgatataaaatgccatgagttaaactaatgggataatgaaaaggcttatagtttct |
3374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 469 - 550
Target Start/End: Original strand, 65192 - 65273
Alignment:
| Q |
469 |
taaatacatattgtatttaaaatgattttgttaaatgtgacagtgtttcacgtgtatctaaaacagcatcatcctcattctc |
550 |
Q |
| |
|
|||||| ||| |||||||| ||||||| |||||||||||| ||||||||| ||| || ||||| |||||| || |||||||| |
|
|
| T |
65192 |
taaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaagcatcttcatcattctc |
65273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 743 - 776
Target Start/End: Complemental strand, 2805368 - 2805335
Alignment:
| Q |
743 |
gagtcaaaatcttctccatttattagtctctcca |
776 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2805368 |
gagtcaaaatcttctccatttattagtctctcca |
2805335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 3453 - 3494
Alignment:
| Q |
469 |
taaatacatattgtatttaaaatgattttgttaaatgtgaca |
510 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
3453 |
taaatacataatgtattcaaaatgattctgttaaatgtgaca |
3494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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