View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_25 (Length: 266)
Name: NF18934_low_25
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 36972824 - 36973068
Alignment:
| Q |
1 |
cacattcgtgtgttttcattttctgggacaaatgagacctaaatgtacctaaaaagaagtatttacgtaccataatgttttattattgctctttatcatt |
100 |
Q |
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| T |
36972824 |
cacattcgtgtgttttcattttctgggacagatgagacctaaatgtacctaaaaagaagtatttacgtaccataatgttttattattgctctttatcatt |
36972923 |
T |
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| Q |
101 |
aatagactatgttttgacaaactttcggtgctcgcgatagcannnnnnncttttataaattcgaatttagtaggtctaaattctttatgtaacttgaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36972924 |
aatagactatgttttgacaaactttcggtgctcgcgatagcatttttttcttctataaattcgaatttagtaggtctaaattctttatgtaactcgaatt |
36973023 |
T |
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| Q |
201 |
ctcgctaacgattgcattaacaaaaccaaattgatgcctctatacatgag |
250 |
Q |
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||||||| ||||||||||||| |||||||||| |||||||||||| |
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| T |
36973024 |
ttcgctaa-----gcattaacaaaactaaattgatgcttctatacatgag |
36973068 |
T |
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