View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_28 (Length: 252)
Name: NF18934_low_28
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 32042424 - 32042178
Alignment:
| Q |
13 |
attctagaatacatgagtgtttgccagaggtggtataattataatattaacaaaaattaaattatgtatcc-------tctataaattaagaacatatct |
105 |
Q |
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| T |
32042424 |
attctagaatacatgagtgtttgccagaggtggtataattataatattaacaaaaattaaattatgtctcccaatggctctataaattaagaacatatct |
32042325 |
T |
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| Q |
106 |
caagaagtaaattaaatcacaacaaataccttcctacaatttccttcttgctctcccaatttactannnnnnnnctctcaataccaccatggcaggaaag |
205 |
Q |
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| T |
32042324 |
caagaagcaaattaaatcacaacaaataccttcctacaatttccttcttgctctcccaatttactatattttttttctcaataccaccatggcaggaaag |
32042225 |
T |
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| Q |
206 |
aaagtgaagcttgcattcataaccaatcacacagcaagaagggcaac |
252 |
Q |
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| T |
32042224 |
aaagtgaagcttgcattcataaccaatcacacagcaagaagggcaac |
32042178 |
T |
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