View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_3 (Length: 836)
Name: NF18934_low_3
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 144 - 745
Target Start/End: Complemental strand, 54607804 - 54607192
Alignment:
| Q |
144 |
ttcctcttaattttacacaaatattaattattattacatggaagagggacgtgtgattaatcgtaacccaagttatcaaaataaggaatgtgggtccaat |
243 |
Q |
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| T |
54607804 |
ttcctcttaattttacacaaatattaattattattacatggaagagggacgtgtgattaatcgtaacccaagttatcaaaataaggaatgtgggcccaat |
54607705 |
T |
|
| Q |
244 |
attagttatataacaggagaagagagggnnnnnnnn---cattggctttttctgctagggcttaatagcagcaacaaattaaccgaaacccttcttcgat |
340 |
Q |
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| T |
54607704 |
attagttatataacaggagaagagagagggaaaaaaaaacattggctttttctgctagggcttaacagcagcagcaaattaaccgaaacccttcttcgat |
54607605 |
T |
|
| Q |
341 |
tgagatgggagnnnnnnncagtatctagtctattgagtgcggcagtgtagggttttcggttcagattgagaggaaggaagaagatggcaaaaacaagtgt |
440 |
Q |
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| T |
54607604 |
tgagatgggagaaaaaaacagtatctagtctattgagtgcggcagtgtagggttttcggttcagattgagaggaaggaagaagatggcaaaaacaagtgt |
54607505 |
T |
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| Q |
441 |
taatcgatatatggatatggacttataagacgtggtagacgtaagtgtgatgtgtctttgttggaggtgaactattatgtttctcattctcaactcgtta |
540 |
Q |
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||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54607504 |
taaccaatatatggatatggac---taagacgtggtagacgtaagtgtgatgtgtctttgttggaggtgaactattatgtttcttattctcaactcgtta |
54607408 |
T |
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| Q |
541 |
actgttccacttctattgatgttgatgctgatgcttctgttaagac-----gaccaaggctcgaaggaaa--------tacgttaggtggtgctaggnnn |
627 |
Q |
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| T |
54607407 |
actgttccacttcta------ctgatgctgatgcttctgttaagacggccaggccaaggctcgaaggaaaagaggaactacgttaggtggtgctaggaaa |
54607314 |
T |
|
| Q |
628 |
nnnnggacttacacgatttggaggaagagnnnnnnngtcacag----tgagtgagtttgcttatatgtataatatgaggcaatgtcaactactcacggtt |
723 |
Q |
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| T |
54607313 |
aaaaggacttacacgatttggaggaagaaaaaaaaagtcatagtgaatgagtgagtttgcttatatgtataatatgaggcaatgtcaactactcacagtt |
54607214 |
T |
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| Q |
724 |
atagtcttacaagttttaacaa |
745 |
Q |
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| T |
54607213 |
atagtcttacaagttttaacaa |
54607192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 54607859 - 54607821
Alignment:
| Q |
55 |
gatatcataatatgcattatacaaaatatataatcaaat |
93 |
Q |
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| T |
54607859 |
gatatcataatatgcattatacaaaatatataatcaaat |
54607821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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