View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18934_low_30 (Length: 247)

Name: NF18934_low_30
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18934_low_30
NF18934_low_30
[»] chr1 (4 HSPs)
chr1 (1-191)||(47833734-47833926)
chr1 (42-131)||(2079121-2079212)
chr1 (1-119)||(25588693-25588812)
chr1 (102-183)||(21431102-21431181)
[»] chr2 (3 HSPs)
chr2 (1-157)||(44686176-44686334)
chr2 (4-146)||(27648323-27648467)
chr2 (1-145)||(36338951-36339097)
[»] chr5 (4 HSPs)
chr5 (1-157)||(33827456-33827614)
chr5 (1-114)||(17895633-17895748)
chr5 (33-145)||(33544967-33545082)
chr5 (45-173)||(34154038-34154165)
[»] chr8 (2 HSPs)
chr8 (1-141)||(15051490-15051632)
chr8 (44-119)||(24542657-24542734)
[»] chr3 (6 HSPs)
chr3 (1-126)||(53833948-53834075)
chr3 (1-126)||(24734307-24734434)
chr3 (1-126)||(53837546-53837673)
chr3 (33-119)||(3083767-3083853)
chr3 (46-121)||(16196765-16196842)
chr3 (33-119)||(7910312-7910400)
[»] chr6 (5 HSPs)
chr6 (22-149)||(14802747-14802875)
chr6 (1-145)||(352977-353123)
chr6 (1-126)||(12273581-12273708)
chr6 (1-118)||(31984797-31984914)
chr6 (13-124)||(807665-807778)
[»] chr4 (1 HSPs)
chr4 (40-145)||(54572844-54572951)
[»] chr7 (2 HSPs)
chr7 (22-109)||(4648262-4648351)
chr7 (46-134)||(38787055-38787145)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 47833926 - 47833734
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtg 98  Q
    ||||||||||||||||||||||| | | | ||||||  ||||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||    
T  47833926 aagagtatttcgccaccccggatgaatcatccgatgcaataggtctcatagctaatactctccagaatacaacagtcgcttcttgctagcaccgcacgtg 47833827  T
Q  99 gattagcaaggtctcaggaaccacttatggatgctcatgggaacttataatttgttatttgttattagcgactaaataaaataagaaatgaaa 191  Q
    ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  47833826 gattaacgaggtctcagaaaccacttatggatgctcatgggaacttataatttgttatttgttattagtgactaaataaaataagagatgaaa 47833734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 2079121 - 2079212
Alignment:
Q  42 ggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtggattagcaaggtctcaggaaccacttatggatg 131  Q
    |||||||||||||||| ||||||||||||||||||  | |||| ||| ||| ||||||  ||||||||||||||| ||||||||| ||||||    
T  2079121 ggtctcatagctaatattctccaggatacaacagtcacgtcttactaacaccgcacgtaaattagcaaggtctcatgaaccacttttggatg 2079212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 25588812 - 25588693
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtg 98  Q
    ||||||||||||||||| || |||  |||  ||||  | ||| ||||||||||| |||||||||| ||||| | |||  ||||||||||||| |||||||    
T  25588812 aagagtatttcgccaccacgaatagattattcgatacggtagatctcatagctagtactctccagaataca-cggtcacttcttgctagcaccgcacgtg 25588714  T
Q  99 gattagcaaggtctcaggaac 119  Q
     ||||||||||||||| ||||    
T  25588713 aattagcaaggtctcatgaac 25588693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 21431102 - 21431181
Alignment:
Q  102 tagcaaggtctcaggaaccacttatggatgctcatgggaacttataatttgttatttgttattagcgactaaat-aaaataag 183  Q
    |||||||| | |||||||||||  |||||||||||||||||||   | |||||||||| |||||| |||||||| ||||||||    
T  21431102 tagcaagggcacaggaaccactcttggatgctcatgggaactt---aattgttatttggtattagtgactaaatgaaaataag 21431181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 44686176 - 44686334
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtg 98  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  44686176 aagagtatttcgccacctcggataagttatccgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtg 44686275  T
Q  99 gattagcaaggtctcaggaaccacttatggatgctcatgggaacttataatttgttatt 157  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  44686276 gattagcaaggtctcaggaatcacttatggatgcttatgggaacttataatttgttatt 44686334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 27648467 - 27648323
Alignment:
Q  4 agtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtggat 101  Q
    ||||||||||||||  |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| |||||    
T  27648467 agtatttcgccaccttggataaattatccgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacatggat 27648368  T
Q  102 tagcaaggtctcaggaaccacttatggatgctcatgggaacttat 146  Q
    || ||||||||||  ||||||||||||||||||||||||||||||    
T  27648367 taacaaggtctcaaaaaccacttatggatgctcatgggaacttat 27648323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 36338951 - 36339097
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtg 98  Q
    ||||||||||||||| | || ||| |||||||||||   ||| |||| | |||| ||||||||||||||||||||||  ||||||||||||| ||| |||    
T  36338951 aagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttcttgctagcaccgcatgtg 36339050  T
Q  99 gattagcaaggtctcaggaaccacttatggatgctcatgggaactta 145  Q
     ||||| |||||||||| |||||||| || |||||||||| ||||||    
T  36339051 aattagtaaggtctcagaaaccacttttgaatgctcatggaaactta 36339097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 33827614 - 33827456
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtg 98  Q
    |||||||||| |||||||||||| | | ||| |||| |||||||||||||| |||||||||||||||||||||| ||  ||||||||||||| |||||||    
T  33827614 aagagtattttgccaccccggatgaatcacctgatgcgataggtctcatagataatactctccaggatacaacaatcgcttcttgctagcaccgcacgtg 33827515  T
Q  99 gattagcaaggtctcaggaaccacttatggatgctcatgggaacttataatttgttatt 157  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||||    
T  33827514 gattagcaaggtctcaagaatcacttatggatgctcttgggaacttataatttattatt 33827456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 17895748 - 17895633
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtg 98  Q
    |||||||||| ||| || ||||| ||||| ||| | |  | ||||||| ||||| ||||||||||||||||||| |  |||||||||| ||| |||| ||    
T  17895748 aagagtattttgccgccacggattagttatccggtatagttggtctcacagctagtactctccaggatacaacaatcacttcttgctaacaccgcacatg 17895649  T
Q  99 gattagcaaggtctca 114  Q
     | |||||||||||||    
T  17895648 aactagcaaggtctca 17895633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 33544967 - 33545082
Alignment:
Q  33 gatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtggattagcaaggtctcaggaaccactt-atgga 129  Q
    |||||| | ||||||||||||| ||||||||| |||||| ||||  | |||||||||||  ||||||| ||||| ||  | |||||||| ||||  ||||    
T  33544967 gatgtggttggtctcatagctagtactctccatgatacagcagtcacatcttgctagcatcgcacgtgaattagaaaaatatcaggaacaacttcttgga 33545066  T
Q  130 tgctcatgggaactta 145  Q
    |||||| |||||||||    
T  33545067 tgctcaagggaactta 33545082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 34154038 - 34154165
Alignment:
Q  45 ctcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtggattagcaaggtctcaggaaccacttatggatgctcatgggaac 142  Q
    |||| ||||| | |||||||||||||||||| |  || |  ||| ||| ||||||| |  ||||||| | |||||||||||  |||||||||||||||||    
T  34154038 ctcaaagctagtgctctccaggatacaacagccacttttcactaacactgcacgtgaaccagcaagggcacaggaaccactattggatgctcatgggaac 34154137  T
Q  143 ttataatttgttatttgttattagcgactaa 173  Q
    ||   | |||||||||| |||||| ||||||    
T  34154138 tt---aattgttatttggtattagtgactaa 34154165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 15051632 - 15051490
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatact-ctccaggatacaacagtc--ttcttgctagcacggcacgt 97  Q
    ||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||| |||||| ||| |||||||  ||||||||||||| ||||||    
T  15051632 aagagtatttcgccatcccggataagttatccgatgcgatagatctcatagctaatacttctccagaata-aacagtcgcttcttgctagcaccgcacgt 15051534  T
Q  98 ggattagcaaggtctcaggaaccacttatggatgctcatgggaa 141  Q
    |||||||||||||||||| ||||||||||||||||||| |||||    
T  15051533 ggattagcaaggtctcagaaaccacttatggatgctcaagggaa 15051490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 24542734 - 24542657
Alignment:
Q  44 tctcatagctaatactctccaggatacaacagtctt--cttgctagcacggcacgtggattagcaaggtctcaggaac 119  Q
    ||||||||||| |||||||||| |||||||| || |  ||||||||||| ||||||| ||||||||||||||| ||||    
T  24542734 tctcatagctagtactctccagaatacaacaatcatatcttgctagcaccgcacgtgaattagcaaggtctcatgaac 24542657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 53833948 - 53834075
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtg 98  Q
    |||||||||| |||| ||||||||| | |||||||| |||||||||||||||||||||||| |||||||||||| |  |||||| ||||||| ||| |||    
T  53833948 aagagtattttgccatcccggataaataacccgatgcgataggtctcatagctaatactctgcaggatacaacaatcacttcttcctagcaccgcatgtg 53834047  T
Q  99 gattagcaaggtctcaggaaccacttat 126  Q
     |||||||||||||||||||||||||||    
T  53834048 aattagcaaggtctcaggaaccacttat 53834075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 24734307 - 24734434
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtg 98  Q
    ||||||| ||||||||||| |||| |||| | ||||   |||||||||||||||||||||||||||||||||||||  | |||| ||||||| ||| |||    
T  24734307 aagagtacttcgccaccccagataggttatctgatgcagtaggtctcatagctaatactctccaggatacaacagtcacatcttactagcaccgcatgtg 24734406  T
Q  99 gattagcaaggtctcaggaaccacttat 126  Q
     |||||||||||||||| ||| ||||||    
T  24734407 aattagcaaggtctcagaaacaacttat 24734434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 53837546 - 53837673
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtg 98  Q
    ||||||||||||||||| ||||| | | | |||||| ||||| |||||||| ||||||||| |||||||||||| |  ||| |||||||||| |||  ||    
T  53837546 aagagtatttcgccacctcggatgaatcatccgatgcgatagatctcatagttaatactctgcaggatacaacaatcactttttgctagcaccgcatatg 53837645  T
Q  99 gattagcaaggtctcaggaaccacttat 126  Q
     |||||||||||||||| || |||||||    
T  53837646 aattagcaaggtctcagaaatcacttat 53837673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 3083853 - 3083767
Alignment:
Q  33 gatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtggattagcaaggtctcaggaac 119  Q
    |||| |||||||||||||||||||||||| ||| ||||| ||||  |||||||||||||| ||| ||| ||  ||||||||||| ||||    
T  3083853 gatgcgataggtctcatagctaatactcttcagaatacagcagtcacttcttgctagcaccgcatgtgaat--gcaaggtctcatgaac 3083767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 16196765 - 16196842
Alignment:
Q  46 tcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtggattagcaaggtctcaggaacca 121  Q
    ||||||||| |||| |||| ||||||||| ||  ||||||||||||| ||| ||| |||| |||||||||| ||||||    
T  16196765 tcatagctagtactttccatgatacaacaatcacttcttgctagcaccgcatgtgaattaacaaggtctcatgaacca 16196842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 7910312 - 7910400
Alignment:
Q  33 gatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtggattagcaaggtctcaggaac 119  Q
    |||||| ||| |||||| |||| |||||| ||||||||||||||  |||||||||| ||| ||| ||| | ||| |||||||| |||||    
T  7910312 gatgtggtagatctcatggctagtactcttcaggatacaacagtcacttcttgctaacaccgcatgtgaaatagtaaggtctcgggaac 7910400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 14802875 - 14802747
Alignment:
Q  22 ataagttacccgatgtgataggtctcatagctaatactctccaggatacaaca--gtcttcttgctagcacggcacgtggattagcaaggtctcaggaac 119  Q
    ||||||||  ||||| ||||| ||| |||||||||||||||||||||||||||    |||||||||||||| ||||||| ||||||||||| |||||||     
T  14802875 ataagttattcgatgcgatagatctgatagctaatactctccaggatacaacaaccacttcttgctagcactgcacgtgaattagcaaggtttcaggaaa 14802776  T
Q  120 cacttatggatgctcatgggaacttataat 149  Q
    ||||| ||||||||||||| ||||||||||    
T  14802775 cactt-tggatgctcatggaaacttataat 14802747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 353123 - 352977
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtg 98  Q
    |||||||||||||||||||| |||  ||| |||||| ||||||||||| ||||||||||||||||||||||| | |  ||||||||||| |  |||||||    
T  353123 aagagtatttcgccaccccgaatagattatccgatgcgataggtctcacagctaatactctccaggatacaataatcacttcttgctagtatcgcacgtg 353024  T
Q  99 gattagcaaggtctcaggaaccacttatggatgctcatgggaactta 145  Q
     ||||||||||| |||  || ||||| ||||||||||  ||||||||    
T  353023 aattagcaaggtgtcactaaacacttttggatgctcaaaggaactta 352977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 12273708 - 12273581
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtg 98  Q
    |||||||||| |||| |||||||   | |||| ||| |||||||||||||| |||||||||  ||||||||||| |  ||||||||||||||  || |||    
T  12273708 aagagtattttgccatcccggatggatcacccaatgcgataggtctcatagttaatactctttaggatacaacaatcacttcttgctagcaccacatgtg 12273609  T
Q  99 gattagcaaggtctcaggaaccacttat 126  Q
     ||||||||||||||| |||| ||||||    
T  12273608 aattagcaaggtctcatgaacaacttat 12273581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 31984914 - 31984797
Alignment:
Q  1 aagagtatttcgccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagtcttcttgctagcacggcacgtgga 100  Q
    ||||||||||| ||||| | ||| | | ||| ||||||   ||||||||||||| | | || ||||||||||||||| | |||||||||  || |||| |    
T  31984914 aagagtatttctccaccacagatgaatcacctgatgtggatggtctcatagctagtgccctacaggatacaacagtcattttgctagcatcgcgcgtgaa 31984815  T
Q  101 ttagcaaggtctcaggaa 118  Q
    ||| ||||||||||||||    
T  31984814 ttaacaaggtctcaggaa 31984797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 807778 - 807665
Alignment:
Q  13 ccaccccggataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagtc--ttcttgctagcacggcacgtggattagcaaggt 110  Q
    ||||| || ||||||||||| ||| | ||||| |||| |||| || ||| || ||||||||||||  || || ||||||| ||||||| |||| ||||||    
T  807778 ccaccacgaataagttacccaatgcgttaggtgtcatggctagtattcttcaagatacaacagtcattttttactagcaccgcacgtgaattaacaaggt 807679  T
Q  111 ctcaggaaccactt 124  Q
    |||| |||| ||||    
T  807678 ctcatgaacaactt 807665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 54572951 - 54572844
Alignment:
Q  40 taggtctcatagctaatactctccaggatacaacagtct--tcttgctagcacggcacgtggattagcaaggtctcaggaaccacttatggatgctcatg 137  Q
    ||||||||||||||||||| ||||| ||||||| ||||   |||||||||||| ||||||| |||| ||| ||||||||||| |||  ||||||||||||    
T  54572951 taggtctcatagctaataccctccaagatacaaaagtcacatcttgctagcaccgcacgtgaattaacaaagtctcaggaactactcttggatgctcatg 54572852  T
Q  138 ggaactta 145  Q
    ||||||||    
T  54572851 ggaactta 54572844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 4648262 - 4648351
Alignment:
Q  22 ataagttacccgatgtgataggtctcatagctaatactctccaggatacaacagt--cttcttgctagcacggcacgtggattagcaagg 109  Q
    ||||||||||||||||  | ||||||||||||| |||||| ||||||||||||||  |||||||||| ||| |||| || ||||||||||    
T  4648262 ataagttacccgatgttgttggtctcatagctagtactcttcaggatacaacagtcacttcttgctaacactgcacatgaattagcaagg 4648351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 38787145 - 38787055
Alignment:
Q  46 tcatagctaatactctccaggatacaacagtct--tcttgctagcacggcacgtggattagcaaggtctcaggaaccacttatggatgctc 134  Q
    |||||| || ||||||||||||||||||||||   |||||||||||| ||| ||| |||| ||| ||||||| |||||||| | |||||||    
T  38787145 tcatagttagtactctccaggatacaacagtcacatcttgctagcaccgcatgtgaattaacaaagtctcagaaaccacttttagatgctc 38787055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University