View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_33 (Length: 241)
Name: NF18934_low_33
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 35772401 - 35772624
Alignment:
| Q |
19 |
ggtttccgattccaccctaccgatgaagaactcgttgttcactacctcaaaagaaaagctgcttctgcacctcttccagtagccatcatagcagagattg |
118 |
Q |
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| T |
35772401 |
ggtttccgattccaccctaccgatgaagaactcgttgttcactacctcaaaagaaaagctgcttctgcacctcttccagtagccatcatagcagagattg |
35772500 |
T |
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| Q |
119 |
atctctacaaattcgacccatgggaactcccaagtatcaaactttttcacaccccatttcatcttttcatccatttactc-aaacccacatcctagattt |
217 |
Q |
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| T |
35772501 |
atctctacaaattcgacccatgggaactcccaagtatcaaactttttcacaccccatttcatcttttcatccatttactcaaaacccacatcctagattt |
35772600 |
T |
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| Q |
218 |
tatgttccttgttttgcatatgaa |
241 |
Q |
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| T |
35772601 |
tatgttccttgttttgcatatgaa |
35772624 |
T |
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Back To:
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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 33761848 - 33761969
Alignment:
| Q |
22 |
ttccgattccaccctaccgatgaagaactcgttgttcactacctcaaaagaaaagctgcttctgcacctcttccagtagccatcatagcagagattgatc |
121 |
Q |
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|||||||| |||||||| |||||||| || |||||||| |||||||| | |||||| ||||| || ||| | ||||||||||||||||| || |||||| |
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| T |
33761848 |
ttccgatttcaccctacagatgaagagcttgttgttcattacctcaagaaaaaagcagcttcagctcctttaccagtagccatcatagctgaagttgatc |
33761947 |
T |
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| Q |
122 |
tctacaaattcgacccatggga |
143 |
Q |
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| T |
33761948 |
tctacaaatttgatccatggga |
33761969 |
T |
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