View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_40 (Length: 209)
Name: NF18934_low_40
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 17951796 - 17951643
Alignment:
| Q |
38 |
actgcaatcaaagtttctacataaactcaatattctataatcatctacataaaacccataaaatgagaacattatccaaaatcactacatttaacaaaaa |
137 |
Q |
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| T |
17951796 |
actgcaatcaaagtttctacataaactcaatattctataatcatctacataaaacccataaaatgagaacattatccaaaatcactacatttaacaaaaa |
17951697 |
T |
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| Q |
138 |
acttaatgacagagatgcatagaccagttgacaacctgaatgaaaccattaact |
191 |
Q |
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| T |
17951696 |
acttaatgacagagatgcatagaccagttgaccacctgaatgaaaccattaact |
17951643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 18110421 - 18110270
Alignment:
| Q |
40 |
tgcaatcaaagtttctacataaactcaatattctataatcatctacataaaacccataaaatgagaacattatccaaaatcactacatttaacaaaaaac |
139 |
Q |
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| T |
18110421 |
tgcaatcaaagtttctacataaactcaatattccataatcatctacataaaacccataaactgagaacattatccaaaatcactttatttaacaaaaaac |
18110322 |
T |
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| Q |
140 |
ttaatgacagagatgcatagaccagttgacaacctgaatgaaaccattaact |
191 |
Q |
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| T |
18110321 |
ttaatgacatggatgcattgaccagttgacagcctgaatgaaaccattaact |
18110270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 19401672 - 19401576
Alignment:
| Q |
93 |
ccataaaatgagaacattatccaaaatcactacatttaacaaaaaacttaatgacagagatgcatagaccagttgacaacctgaatgaaaccattaact |
191 |
Q |
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| T |
19401672 |
ccataaaatgagaacattatccaaaatcactacatttaacacaaa--ttaatgacagaaatacatagaccagttggcaacctgaatgaaaccagtaact |
19401576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 18017927 - 18017853
Alignment:
| Q |
112 |
tccaaaatcactacatttaacaaaaaacttaatgacagagatgcatagaccagttgacaacctgaatgaaaccatta |
188 |
Q |
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|||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18017927 |
tccaaaatcactacatttaacacaaa--ttaatgacagaaatgcatagaccagttgacaacctgaatgaaaccatta |
18017853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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