View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18934_low_5 (Length: 727)
Name: NF18934_low_5
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18934_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 397 - 722
Target Start/End: Complemental strand, 9234302 - 9233977
Alignment:
| Q |
397 |
ttttcaacttcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
496 |
Q |
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| T |
9234302 |
ttttcaacctcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
9234203 |
T |
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| Q |
497 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacattctcttcctcagcagttactgctgct |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9234202 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacattctcttcctcagcagttactgctgct |
9234103 |
T |
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| Q |
597 |
ggtgcttctgactcattttcaatggttgctacaggctcctccactactgctgcagcctcttccttcacttcttcaactgattcctctgtttctttaggtg |
696 |
Q |
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| T |
9234102 |
ggtgcttctgactcattttcaatggttgctacaggctcctccactactgctgcagcctcttccttcacttcttcaactgattcctctgtttctttaggtg |
9234003 |
T |
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| Q |
697 |
cttctgtattctcttcctttgcttct |
722 |
Q |
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| T |
9234002 |
cttctgtattctcttccttggcttct |
9233977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 9234682 - 9234363
Alignment:
| Q |
19 |
ctaaccgattcataaccaaataaaaacataagatgataaatagttgggacaaagacaagacag--tataaaacaaagtaaatatcatttattcaaatcta |
116 |
Q |
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| T |
9234682 |
ctaaccgattcataaccaaataaaaacataagatgataaatagttgggacaaagacaagacagagtatacaacaaagtaaatatcatttattcaaatcta |
9234583 |
T |
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| Q |
117 |
gagaaacacaggaacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaat |
216 |
Q |
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| T |
9234582 |
gagaaacacaggaacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaat |
9234483 |
T |
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| Q |
217 |
ttcacatcagatgtccaccattcaacatgtatatatatgctgacatggagcaaagttccatacataactgatgtagatagctataccctccatatgaata |
316 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9234482 |
ttcacatcacatgtccaccattcagcatgtatatatatgctgacatggagtaaagttccatacataactgatgtagatagctataccctccatatgaata |
9234383 |
T |
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| Q |
317 |
accatttccaaagacttact |
336 |
Q |
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| T |
9234382 |
accatttccaaagacttact |
9234363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 9246024 - 9245933
Alignment:
| Q |
115 |
tagagaaacacaggaacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcat |
206 |
Q |
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|||||||||||| ||||||| | || ||| ||||| ||||||||||||||||||| |||||||||| |||| |||||||||||| |||||| |
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| T |
9246024 |
tagagaaacacaataacacactacgacaaagtcatggaaccttcccaagaaccatatcaccttatagttgatgacttcaatacacgactcat |
9245933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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