View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18934_low_6 (Length: 686)

Name: NF18934_low_6
Description: NF18934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18934_low_6
NF18934_low_6
[»] chr2 (11 HSPs)
chr2 (259-675)||(9322779-9323194)
chr2 (17-260)||(9322501-9322744)
chr2 (278-675)||(11423929-11424323)
chr2 (314-570)||(32304267-32304523)
chr2 (29-260)||(11424415-11424639)
chr2 (81-196)||(9330583-9330698)
chr2 (294-439)||(9330826-9330972)
chr2 (320-392)||(11425636-11425708)
chr2 (105-158)||(11425916-11425969)
chr2 (223-260)||(9330754-9330791)
chr2 (207-260)||(11425803-11425856)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 259 - 675
Target Start/End: Original strand, 9322779 - 9323194
Alignment:
Q  259 aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322779 aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt 9322878  T
Q  359 cccatttctaacatcaaagttgcatcgaaacattcggagcctcgcccttctgctactcgcaatctaacaaatctgtaagataaaacacctccctcctcgc 458  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9322879 cccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaatctaaccaatctgtaagataaaacacctccctcctcgc 9322978  T
Q  459 cagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaaggcattggctactttga 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9322979 cagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaaggcattggcttctttga 9323078  T
Q  559 agcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatctattcaatagtagtaccagcttgagtcataaatcggtcaagacaataatca 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  9323079 agcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatctattcaatagtagtaccagcttgagtcataagtcggtcaagacaataatc- 9323177  T
Q  659 gcaaccagtgcattcat 675  Q
    |||||||||||||||||    
T  9323178 gcaaccagtgcattcat 9323194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 9322501 - 9322744
Alignment:
Q  17 aacaattatataaaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322501 aacaattatataaaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcattt 9322600  T
Q  117 catgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttgtacaccaagnnnnnnntggttaatacaaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||    
T  9322601 catgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttttacaccaagaaaaaaatggttaatacaaa 9322700  T
Q  217 catgttaaaaagccatgctctaaacaaatatgggatggtaccaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9322701 catgttaaaaagccatgctctaaacaaatatgggatggtaccaa 9322744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 278 - 675
Target Start/End: Complemental strand, 11424323 - 11423929
Alignment:
Q  278 ccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaag 377  Q
    |||||||||| ||||||||||| ||||||||||||  ||||||||| |||||| ||| || |||| |||||||||||||||||||||||  |||||||||    
T  11424323 ccaggcctttcagaaaccgatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaag 11424224  T
Q  378 ttgcatcgaaacattcggagcctcgcccttctgctactcgcaatctaa-caaatctgtaagataaaacacctccctcctcgccagttaccacatcaccag 476  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| | | |||||||||||| || ||||||||||||| ||||||| |||||||||||    
T  11424223 ttgcatcgaaacattccgagcctcgaccttctgctactcgcaatcttagccaatctgtaagatcaa-cacctccctcctcaccagttatcacatcaccag 11424125  T
Q  477 cacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaaggcattggctactttgaagcagctaactcgtgtgc 576  Q
    |||| |||| ||||||||||| ||||||||||||||| ||| | ||||||||||||||||| ||||||||||||| ||| ||||||||||||||  ||||    
T  11424124 cacaccttccggttaaaagttccaaaagtatcacgccgaaagcatagacatctgacttgaaagaaggcattggcttcttggaagcagctaactctggtgc 11424025  T
Q  577 gcaataacctaagacaccataagagaaaatctattcaatagtagtaccagcttgagtcataaatcggtcaagacaataatcagcaaccagtgcattcat 675  Q
    || |||||||||||||||       | |||||  ||||   ||||||||||||||||||||| ||||| ||||||||||||||| ||  ||||||||||    
T  11424024 gcgataacctaagacaccggcgtcaagaatctgctcaa---tagtaccagcttgagtcataagtcggtgaagacaataatcagcgacacgtgcattcat 11423929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 314 - 570
Target Start/End: Original strand, 32304267 - 32304523
Alignment:
Q  314 actattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaagttgcatcgaaacattcggagcctcgcccttctgcta 413  Q
    |||||||||| |||||| ||| || |||| ||||||||| |||||||||||||| |||||||||||||||| |||||||| ||| |||| ||||||||||    
T  32304267 actattcctatgacctccttcattcccttttctacaactagatttcccatttctgacatcaaagttgcatcaaaacattccgagactcgaccttctgcta 32304366  T
Q  414 ctcgcaatc-taacaaatctgtaagataaaacacctccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgc 512  Q
    ||| || || || | |||||| |||||  ||||||||||||||| | ||||| |||||||| |||||| |||| |||||||||||  ||||| ||||| |    
T  32304367 ctcacagtcttagccaatctgcaagat-caacacctccctcctcactagttatcacatcacaagcacaccttccggttaaaagttcaaaaagcatcacac 32304465  T
Q  513 caaaaccttagacatctgacttgaaggaaggcattggctactttgaagcagctaactc 570  Q
    | ||| |  ||||||||||||||||||||||||||| || ||| ||||||| ||||||    
T  32304466 cgaaaacaaagacatctgacttgaaggaaggcattgtcttcttggaagcagttaactc 32304523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 11424639 - 11424415
Alignment:
Q  29 aaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcatttcatgacacatta 128  Q
    |||| ||||| ||||||||||||||||||||||| || |||| |||||||| | |||||||||||  ||   |||||||||||||||||||||||||||     
T  11424639 aaattaaccacaaatagaactgctaaaccattccactgccaaattgtacaa-cattcatctcttg--ct---aaacaaatgatcatttcatgacacattc 11424546  T
Q  129 tcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttgtacaccaagnnnnnnntggttaatacaaacatgttaaaaag 228  Q
     ||||||||| |||||| |||||||||||| ||| ||||| ||| ||||| || || | ||||  ||        |||||||||||||||||||||||||    
T  11424545 ccattttaagacaaaatcaaatggtcatatccaatcatgtactacccatgtatctgctttacattaa-caaaaattggttaatacaaacatgttaaaaag 11424447  T
Q  229 ccatgctctaaacaaatatgggatggtaccaa 260  Q
    ||||||||||||||||||||||||| ||||||    
T  11424446 ccatgctctaaacaaatatgggatgataccaa 11424415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 9330583 - 9330698
Alignment:
Q  81 ctttcatctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaa 180  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||| |    
T  9330583 ctttcatctcttgtacttgcaaacaaatgaacatttcatgacacattaccattttaagacaaaattaaatggacatattcaaccatgtgctagcaatgta 9330682  T
Q  181 tgtgttgtacaccaag 196  Q
    |||| | |||||||||    
T  9330683 tgtgctttacaccaag 9330698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 294 - 439
Target Start/End: Original strand, 9330826 - 9330972
Alignment:
Q  294 ccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaagttgcatcgaaacattc 393  Q
    |||||| |||| |||||||| ||||||||| |||||||||| || |||| ||||||| | ||||||||||||||||| |||||| |||||||||||||||    
T  9330826 ccgatcaaatatatcgaatcgctattcctaggacctcattcattcccttttctacaattagatttcccatttctaacgtcaaagctgcatcgaaacattc 9330925  T
Q  394 ggagcctcgcccttctgctactcgcaatc-taacaaatctgtaagat 439  Q
    ||||||||| |||| |||||||||||||| || | ||||||||||||    
T  9330926 ggagcctcgaccttatgctactcgcaatcttagccaatctgtaagat 9330972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 11425708 - 11425636
Alignment:
Q  320 cctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaagttgcatcgaaacatt 392  Q
    |||| |||||| ||| || |||| |||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  11425708 cctaggacctccttcattcccttttctacaactggattccccatttctaacatcaaagtagcatcaaaacatt 11425636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 11425969 - 11425916
Alignment:
Q  105 aaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatat 158  Q
    |||||||||||||||||||||||  ||||||||| |||||| ||||||||||||    
T  11425969 aaatgatcatttcatgacacattcccattttaagacaaaatcaaatggtcatat 11425916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 9330754 - 9330791
Alignment:
Q  223 aaaaagccatgctctaaacaaatatgggatggtaccaa 260  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9330754 aaaaagtcatgctctaaacaaatatgggatggtaccaa 9330791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 11425856 - 11425803
Alignment:
Q  207 ttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa 260  Q
    |||||||| |||| |||||||||||||| ||||||||||| | |||| ||||||    
T  11425856 ttaatacagacatcttaaaaagccatgccctaaacaaatacgagatgataccaa 11425803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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