View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_high_1 (Length: 497)
Name: NF18935_high_1
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Original strand, 32593218 - 32593685
Alignment:
| Q |
10 |
aagaatatgatagtagttaataaggagtggacaagttgagtttgcctttaatgttgagagcctgtatggacatgccatgagacatgagtcactatttaat |
109 |
Q |
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| T |
32593218 |
aagaatatgatagtagttaataaggagtggacaatttgagtttgcctttaatgttgagagcctgtatggacatgccatgagacatgagtcactatttaat |
32593317 |
T |
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| Q |
110 |
ggctaaagtccattttctttattaaataggaaatgatcaaaattctgataacaaatccaagaccacatgcacatcccctttcgcgacatagtcacaaata |
209 |
Q |
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| T |
32593318 |
ggctaaagtccattttctttattaaataggaaatgatcaaaattctgataacagatccaagaccacatgcacatcccctttcg--acatagtcacaaata |
32593415 |
T |
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| Q |
210 |
attccaatgttgtacaacctccatatgggatcgttcctaaatctgcaagagccaagagggacaactaactattttcgttactatgagagcgaccagccat |
309 |
Q |
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| T |
32593416 |
attccaatgttgtacaacctccatatgggatcgttcctaaatctgcaagagccaagagggacaactaactattttcgttactatgagagcgaccagccat |
32593515 |
T |
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| Q |
310 |
gttgtagtatggtgcagtattgaaccaattaccagcaacatattactttcttgaagcattaatccatgatggataatgatgaggttcctccttctccaac |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32593516 |
gttgtagtatggtgcagtattgaaccaattaccagcaacatattactttcttgaagcgttaatccatgatcgataatgatgaggttcctccttctccaac |
32593615 |
T |
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| Q |
410 |
tcaccatatgactactacttgtcaaacaacttatttaacctatgaagcacatactccgatacggacattt |
479 |
Q |
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| T |
32593616 |
tcaccatatgactactacttgtcaaacaacttatttaacctatcaagcacatactccgacacggacattt |
32593685 |
T |
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