View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_high_6 (Length: 322)
Name: NF18935_high_6
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_high_6 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 13660516 - 13660815
Alignment:
| Q |
1 |
tcatttagactgaaagccgtgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttag |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660516 |
tcatttagactgaaagcagtgaataacaatgattctatatcatattcggaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttag |
13660615 |
T |
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| Q |
101 |
acaaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttgg |
200 |
Q |
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| T |
13660616 |
acaaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttgg |
13660715 |
T |
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| Q |
201 |
agttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaatagtttcgggaaatcaa |
300 |
Q |
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| T |
13660716 |
agttatcggggatatgttggcatcaaacaattttagttcgggttcgtctgtgctcgttgtgcaacaatatgggtacggaggaatggtttcgggaaatcaa |
13660815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 13653016 - 13653315
Alignment:
| Q |
1 |
tcatttagactgaaagccgtgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttag |
100 |
Q |
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||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
13653016 |
tcatttagactgaaagcagtgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgatgatttag |
13653115 |
T |
|
| Q |
101 |
acaaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttgg |
200 |
Q |
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| T |
13653116 |
acaaatttggttgtgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttgg |
13653215 |
T |
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| Q |
201 |
agttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaatagtttcgggaaatcaa |
300 |
Q |
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| T |
13653216 |
agttatcggggatatgttggcatcaaacaattttagttcgggttcatcagtgttagttgtgcaacaatatgggtacggaggaatagtttcgggaaatcaa |
13653315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 28609164 - 28609440
Alignment:
| Q |
20 |
tgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagacaaatttggttatgattt |
119 |
Q |
| |
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|||| ||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| ||||||||| |||| ||| |||||| ||||| |
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| T |
28609164 |
tgaacaacaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgattt |
28609263 |
T |
|
| Q |
120 |
atacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttg |
219 |
Q |
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| T |
28609264 |
atacatagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatatttta |
28609363 |
T |
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| Q |
220 |
gcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaatagtttcgggaaa |
296 |
Q |
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| T |
28609364 |
gcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaatggttttgggaaa |
28609440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 437757 - 437471
Alignment:
| Q |
3 |
atttagactgaaagccgtgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagac |
102 |
Q |
| |
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||||||| ||| ||| |||| ||||||||||||||||| ||||| || ||| ||||||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
437757 |
atttagattgacagcgatgaacaacaatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaa |
437658 |
T |
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| Q |
103 |
aaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggag |
202 |
Q |
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| T |
437657 |
aatttttattgcaatttatatatagttggacaagggaatcgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggag |
437558 |
T |
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| Q |
203 |
ttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaatagttt |
289 |
Q |
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|| | ||||| || ||||||||| | |||||| |||| | ||||| ||||| |||||||||||||||||||| || ||||| |||| |
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| T |
437557 |
ttttaggggacattttggcatcagataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaatggttt |
437471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 17597464 - 17597564
Alignment:
| Q |
172 |
ttggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatg |
271 |
Q |
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||||||||| ||||||||| |||||||| ||||| || || ||||| |||||||| | |||| |||| |||||| | || |||||||||||||||| |
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| T |
17597464 |
ttggaatgggctgattgtcctgaacttggtgttattggtgacatgttagcatcaaatagttttggttcaaattcatcaatacttgttgtgcaacaatatg |
17597563 |
T |
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| Q |
272 |
g |
272 |
Q |
| |
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| T |
17597564 |
g |
17597564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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