View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_high_8 (Length: 267)
Name: NF18935_high_8
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 14588795 - 14588554
Alignment:
| Q |
18 |
tcaagttctctagaggttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccagaatcattcttcacag |
117 |
Q |
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| T |
14588795 |
tcaagttctctagaggttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccataatcattcttcacag |
14588696 |
T |
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| Q |
118 |
ccgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccc |
217 |
Q |
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| T |
14588695 |
ctgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccc |
14588596 |
T |
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| Q |
218 |
tggtggattaaagaaaaccaaggttcgagctgcacctatgct |
259 |
Q |
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| T |
14588595 |
tggtggattaaagaaaaccaagttccgagctgcgcctatgct |
14588554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 14622453 - 14622232
Alignment:
| Q |
18 |
tcaagttctctagaggttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccagaatcattcttcacag |
117 |
Q |
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| T |
14622453 |
tcaagttctctagaggttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccataatcattcttcacag |
14622354 |
T |
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| Q |
118 |
ccgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccc |
217 |
Q |
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| T |
14622353 |
ttgactgtattctcataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccc |
14622254 |
T |
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| Q |
218 |
tggtggattaaagaaaaccaag |
239 |
Q |
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| T |
14622253 |
tggtggattaaagaaacccaag |
14622232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 1361611 - 1361556
Alignment:
| Q |
132 |
ataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtgg |
187 |
Q |
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| T |
1361611 |
ataatctcataaggtttgagatgaatggttgtttgaaaaggaacccattttggtgg |
1361556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 20492380 - 20492331
Alignment:
| Q |
145 |
gtttgagatgaatggttgtttggaaaggaacccattttggtggactatac |
194 |
Q |
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| T |
20492380 |
gtttgaaatgaatgtttgttttgaaaggaacccactttggtggactatac |
20492331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 11530203 - 11530122
Alignment:
| Q |
152 |
atgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaa |
233 |
Q |
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| T |
11530203 |
atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaa |
11530122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 29954372 - 29954317
Alignment:
| Q |
18 |
tcaagttctctagaggttctgaaaagaaaaaggtcaacacttgcgtatagtttgtc |
73 |
Q |
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|||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||| |
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| T |
29954372 |
tcaagttctctagaggttcttataagaaaaaggtcacaacttgagtatactttgtc |
29954317 |
T |
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