View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_high_9 (Length: 260)
Name: NF18935_high_9
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 10634888 - 10634630
Alignment:
| Q |
1 |
ttttctaaaatggttacctctctcacataatatttttttcgcaaaataattgcctttttattttccttnnnnnnnnn--------cttacctttttattt |
92 |
Q |
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| T |
10634888 |
ttttctaaaattgttacctctctcacataatatttttttcgcaaaataattacctttttattttccttaaaaaaaaaaaaaaaaacttacctttttattt |
10634789 |
T |
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| Q |
93 |
ctgcactacatgaattattaattagaaaatatgagttaacttttttacttatcacaattgtatatacattttgcatttcagcaaaagtttttcaaaagtt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
10634788 |
ctgcactacatgaattattaattagaaaatatgagttaacttttttacttatcacaattgtatataca-tttgcatttcatcaaaagtttttcaaaagtt |
10634690 |
T |
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| Q |
193 |
tccgcaaagtttaatcgctccttctttttcccttttcattgttttgcttctgttcatttc |
252 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
10634689 |
tccccaaagtttaatcgctccttctttttcccttttcattgttttgcttatgttcttttc |
10634630 |
T |
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