View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_low_14 (Length: 230)
Name: NF18935_low_14
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_low_14 |
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| [»] scaffold0444 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 30183252 - 30183050
Alignment:
| Q |
14 |
caaaggcggtaaggtcatgaaccatatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcat |
113 |
Q |
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| T |
30183252 |
caaaggcggtaaggtcatgaaccctatctatctattttcactttcattacagtaaattgaaattttgagtgtttattttgcaaaattgaatttcaatcat |
30183153 |
T |
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| Q |
114 |
gcaattaggttttattccatttttgctttgttgttttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcct |
213 |
Q |
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| T |
30183152 |
gcaattaggttttattccatttttgctttgttgttttggtttacagaattaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcct |
30183053 |
T |
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| Q |
214 |
gat |
216 |
Q |
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||| |
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| T |
30183052 |
gat |
30183050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 44431074 - 44430981
Alignment:
| Q |
123 |
ttttattccatttttgctttgttgttttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcctgat |
216 |
Q |
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| T |
44431074 |
ttttattccatttttgctttgttgttttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgat |
44430981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 44431201 - 44431114
Alignment:
| Q |
38 |
tatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattaggtttt |
126 |
Q |
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| T |
44431201 |
tatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattaggtttt |
44431114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 44441471 - 44441403
Alignment:
| Q |
148 |
tttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcctgat |
216 |
Q |
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| T |
44441471 |
tttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgat |
44441403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 44441649 - 44441566
Alignment:
| Q |
38 |
tatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattagg |
122 |
Q |
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| T |
44441649 |
tatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaattatgcaaatagg |
44441566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 6284 - 6216
Alignment:
| Q |
148 |
tttggtttacagaataaaaaagaaagaaagaaggttagggatgtggggattttgaagaaagatcctgat |
216 |
Q |
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| T |
6284 |
tttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgat |
6216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 6462 - 6379
Alignment:
| Q |
38 |
tatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattagg |
122 |
Q |
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| T |
6462 |
tatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaattatgcaaatagg |
6379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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