View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_low_4 (Length: 376)
Name: NF18935_low_4
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 22193102 - 22192759
Alignment:
| Q |
15 |
tatttacacaaatttgtaagattgattttaaaatttgaaagaactaatagtatatagtaggcatgcagataaagtttaacttcactcggttatataccta |
114 |
Q |
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| T |
22193102 |
tatttacacaaatttgttagattgattttaaaatctgaaagaactaatagtatatagtaggcatgcagataaagtttaacttcactcggttatataccta |
22193003 |
T |
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| Q |
115 |
attcgtccatttagacaacaatatgataataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataa |
214 |
Q |
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| T |
22193002 |
attcgtccatttagacaacaatatgataataacaaaccttcctttgaacagattgatatcatgaatgccctcattgatggacaacttagtgaaacaataa |
22192903 |
T |
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| Q |
215 |
gtgtttgaaacacttttttagttgaataataagtgtttgatgacaacagaaatcaatcttaggagatacacatgcaactacaaaaacatatgtagggata |
314 |
Q |
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| T |
22192902 |
gtgtttgaaacacttttttagttgaataataattgtttgataacaacagaagtcaatcttaggagatacacatgcaactacaaaaacatatgtagggata |
22192803 |
T |
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| Q |
315 |
tcaccttcttccttgattttggcatactttagcatcacaaccac |
358 |
Q |
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| T |
22192802 |
tcaccttcttccttgattttggcatactttagcatcacaaccac |
22192759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 27133443 - 27133530
Alignment:
| Q |
142 |
aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt |
229 |
Q |
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| T |
27133443 |
aataacaaaccttcccttgaatagattaatctcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt |
27133530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 27133620 - 27133679
Alignment:
| Q |
299 |
aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac |
358 |
Q |
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| T |
27133620 |
aacagatgtaggggtaaaaccttcttccttgatcttggtatacttcagcatcacaaccac |
27133679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 26410675 - 26410589
Alignment:
| Q |
142 |
aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt |
229 |
Q |
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| T |
26410675 |
aataacaaaccttcccttgaa-agattaatctcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt |
26410589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 26410499 - 26410440
Alignment:
| Q |
299 |
aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac |
358 |
Q |
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| T |
26410499 |
aacagatgtaggggtaaaaccttcttccttgatcttggcatacttcagcatcacaaccac |
26410440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 24028178 - 24028229
Alignment:
| Q |
177 |
gaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacact |
228 |
Q |
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||||||| |||||||| ||||||||||| || ||||||||||||||||||| |
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| T |
24028178 |
gaatgtcagcattgatgaacaacttagtgtaagaataagtgtttgaaacact |
24028229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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