View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_low_5 (Length: 348)
Name: NF18935_low_5
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 31853038 - 31853241
Alignment:
| Q |
9 |
gaagaatataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatggtcaaaccataattctcaaagtttctgagcagc |
108 |
Q |
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| T |
31853038 |
gaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatggtcaaaccataattctcaaagtttctaagcagc |
31853137 |
T |
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| Q |
109 |
tttgatttttgatcaaacatgtttagagccataactctaccatcatctgtttctattttggtttcaaaatctctgtcttcaaaaacataaggattttcat |
208 |
Q |
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| T |
31853138 |
tttgatttttgatcaaacatgtttagagccataactctaccatcatctgtatctattttggtttcaaaatctctgtcttcaaaaacataaggattttcat |
31853237 |
T |
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| Q |
209 |
cctc |
212 |
Q |
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|||| |
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| T |
31853238 |
cctc |
31853241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 31853306 - 31853366
Alignment:
| Q |
271 |
tctcgctcttgcttcatccgatgatagtcctcacacttgtccatgcatattcgcttatcct |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31853306 |
tctcgctcttgcttcatccgatgatagtcctcacacttgtccatgcatattcccttatcct |
31853366 |
T |
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