View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18935_low_8 (Length: 305)
Name: NF18935_low_8
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 13396106 - 13396393
Alignment:
| Q |
17 |
attgggattattagttcgtgtccatgcatgatgcacatatatagttgtactcgtactatcttatgcaaaaactactttaccnnnnnnnn-gttaatactt |
115 |
Q |
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| T |
13396106 |
attgggattattagttcgtgtccatgcatgatgcacatatatagttgtacttgtactatcttatgcaaaaactactttacctttttttttgttaatactt |
13396205 |
T |
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| Q |
116 |
gggattagaaaaacagaattaattgaaaggcacactcaactttatgagtgaaaagttataatgtaaacgtatttgctttgtcataaaacattggcactat |
215 |
Q |
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| T |
13396206 |
gggattagaaaaacagaattaattgaaaggcacactcaactttatgagtgaaaagttataatgtaaacgtatttgctttgtcataaaacattggcactat |
13396305 |
T |
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| Q |
216 |
ctttttcttcatcactcataagtcataacttcacaaagataaccttatggtgctaattaacaatatcccttgtggtattcctagtata |
303 |
Q |
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| T |
13396306 |
ctttttcttcatcactcataagtcataacttcacaaagataaccttatggtgctaattaacaatatcccttgtggtattcctagtata |
13396393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 13393218 - 13393352
Alignment:
| Q |
110 |
atacttgggattagaaaaacagaattaattgaaaggcacactcaactttatgagtgaaaa-gttataatgtaaacgtatttgctttgtcataaaacattg |
208 |
Q |
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| T |
13393218 |
atacttgtgagtaaaataactgaattaactgaaagacacactcaactttgtgagtgaaagtgtcatcatgtacacgtgtttgctttgtcataaaacatta |
13393317 |
T |
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| Q |
209 |
gcactatctttttcttcatcactcataagtcataa |
243 |
Q |
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| T |
13393318 |
gcactatctttttcttcatcactcataagtcataa |
13393352 |
T |
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