View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18935_low_9 (Length: 271)
Name: NF18935_low_9
Description: NF18935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18935_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 11119442 - 11119686
Alignment:
| Q |
10 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119442 |
catcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctcc |
11119541 |
T |
|
| Q |
110 |
atcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcattt |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11119542 |
atcatcgttgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccattt |
11119641 |
T |
|
| Q |
210 |
cctaaattcagcttaggttcaatatacaattcaacatcgcacttc |
254 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
11119642 |
cctaaattcaccttaggttcaacatacaattcaacatcacacttc |
11119686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 12205970 - 12206172
Alignment:
| Q |
29 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
128 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
129 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggtt |
228 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
|
| Q |
229 |
caa |
231 |
Q |
| |
|
||| |
|
|
| T |
12206170 |
caa |
12206172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 32741144 - 32741389
Alignment:
| Q |
8 |
gacatcatcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatct |
107 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
32741144 |
gacattatcaaacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatct |
32741243 |
T |
|
| Q |
108 |
ccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcat |
207 |
Q |
| |
|
||| |||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
32741244 |
ccaccatcgatgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcat |
32741343 |
T |
|
| Q |
208 |
ttcctaaattcagcttaggttcaatatacaattcaacatcgcactt |
253 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
32741344 |
ttcctaaattcaccttaggttcaacatacaattcaacatcgcactt |
32741389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University