View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_high_10 (Length: 573)
Name: NF18936_high_10
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_10 |
 | |
|
| [»] scaffold1051 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 41311198 - 41311395
Alignment:
| Q |
1 |
ataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311198 |
ataacatccatttcagtcttatcatcataaaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct |
41311297 |
T |
|
| Q |
101 |
tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagataccatgtatttttat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311298 |
tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagataccatgtatttttat |
41311395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 43164876 - 43165062
Alignment:
| Q |
1 |
ataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct |
100 |
Q |
| |
|
|||||||| |||||||||| || || ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| | || ||| |||||||| |
|
|
| T |
43164876 |
ataacatctatttcagtctcataattataaaccagccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattcc |
43164975 |
T |
|
| Q |
101 |
tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacca |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
43164976 |
aataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacca |
43165062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 477 - 555
Target Start/End: Original strand, 41311412 - 41311490
Alignment:
| Q |
477 |
tagagcttcatgagcataagctttcttgaaaagataagttttcaccgacatgattctatgtgtggatgatgcagcaagt |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311412 |
tagagcttcatgagcataagctttcttgaaaagataagttttcaccgacatgattctatgtgtggatgatgcagcaagt |
41311490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30165729 - 30165608
Alignment:
| Q |
1 |
ataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct |
100 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||| ||| |
|
|
| T |
30165729 |
ataacatccatttcagtctgataattataaaccagccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttcc |
30165630 |
T |
|
| Q |
101 |
tataaggcaaatcagaatcaaa |
122 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
30165629 |
tataaggcaaatgagaatcaaa |
30165608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 30125184 - 30125328
Alignment:
| Q |
33 |
cagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgt |
132 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| | || ||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
30125184 |
cagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatttcc |
30125283 |
T |
|
| Q |
133 |
tcccattgattacctctcaatgagaacatctccaagtcaattgaa |
177 |
Q |
| |
|
||||| | |||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
30125284 |
tcccacttattagctctcaatgggaaaatctccaagtcaattgaa |
30125328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 30131424 - 30131515
Alignment:
| Q |
286 |
ataggagacagaggtatttgcttgttgacacgagtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctaca |
377 |
Q |
| |
|
|||||||| ||||||||||| || ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
30131424 |
ataggagagagaggtatttgtttattgacaccagtggatggattccataggtagaggcatttgtaaacgtccaataatagaaaccctctaca |
30131515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 445
Target Start/End: Original strand, 30125466 - 30125593
Alignment:
| Q |
318 |
agtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctacacgaacctataatatcaatgcaggattggggaggcacaaaa |
417 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||| |||||||||||||||||| ||||||||||||||| |||| | | | ||| || |||||| |||| |
|
|
| T |
30125466 |
agtggatggattccaaaggtagaggcatgtgttacagtccaataatagaaaccctctacacgaacctctaattttaggataagatcggtgaggcaaaaaa |
30125565 |
T |
|
| Q |
418 |
tcaaggcttagtgaatgataagcagaat |
445 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
30125566 |
ccaaggtgtagtgaatgataagcagaat |
30125593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
| Q |
141 |
attacctctcaatgagaacatctccaagtcaattgaactagatacc |
186 |
Q |
| |
|
|||| ||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
28180514 |
attagctctcaatgagaaaatctctaattcaattgaactagatacc |
28180559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
| Q |
102 |
ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc |
186 |
Q |
| |
|
||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
21430244 |
ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc |
21430161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 21426550 - 21426470
Alignment:
| Q |
101 |
tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactag |
181 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||| ||||| || | ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
21426550 |
tataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaactag |
21426470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 1971 - 2039
Alignment:
| Q |
103 |
taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca |
171 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||| | |||| ||||||||||||| |||||||||||| |
|
|
| T |
1971 |
taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca |
2039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University